Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10585
         (780 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    30   0.43 
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    26   5.3  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    26   7.0  
SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces...    26   7.0  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   9.2  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   9.2  

>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 29.9 bits (64), Expect = 0.43
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = -1

Query: 624 CSKIIFSKILLNVGSTEMGLKLVGSKVLPDLNRGIILLYSLDQETH 487
           CS+ +F K    V    +  K  G  V  DLNR II L   +  TH
Sbjct: 554 CSRYVFGK---KVNHLTLNFKRFGHAVAADLNRNIIYLMGGNASTH 596


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = +3

Query: 231 YPSFYYKILISSPTVAESLLQDHVDECSVNFKFTNIAIKDIIDNFKTINI 380
           YP  + KI ++  T+ +S    +V    +N+ F N  I + I+ F TI I
Sbjct: 420 YPLLHSKIHLAISTLKDSGCDWNVGLSYLNWLFVNKRITEAINFFYTITI 469


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
           Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = +3

Query: 225 C*YPSFYYKILISSPTVAESLLQDHVDECSVNF 323
           C  PS   + L  S +VAES+     D CS NF
Sbjct: 540 CPSPSLSTEDLFESFSVAESVTSTDEDICSTNF 572


>SPCC126.11c |||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 183

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 539 GSTFDPTNFRPISVLPTLSKIFEKIILEQLLNHFYSNNL 655
           G    PTN +  S L +   +F+K I++QL N+   N L
Sbjct: 23  GRVGKPTNAKTGSALTSDKSLFDKRIVKQLKNNELFNRL 61


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 103 WNIINRETGNVRNSNAESILKINDKIITS 189
           WN+  RE   +      S L+INDK +TS
Sbjct: 414 WNLEQREEPGIETVLDFSKLRINDKTMTS 442


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +3

Query: 318 NFKFTNIAIKDIIDNFKTIN--IKKTGD 395
           NFK  +I +KD +D+FK  N  IK  GD
Sbjct: 843 NFK-PDITLKDYVDSFKPTNTVIKPLGD 869


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,067,007
Number of Sequences: 5004
Number of extensions: 62670
Number of successful extensions: 189
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)