Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10585
         (780 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containi...    31   0.86 
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein...    31   1.1  
At3g47910.1 68416.m05224 expressed protein low similarity to non...    30   2.0  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    29   3.5  
At3g06435.1 68416.m00743 Expressed protein                             28   8.0  
At1g07230.1 68414.m00769 phosphoesterase family protein low simi...    28   8.0  

>At5g50990.1 68418.m06322 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 511

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +1

Query: 1   VCKYSKLFKKVCTLAKSLHLGKLIKNAPDKIKMTWNIINRETGNVRNSNAESILK 165
           VC  + + + +  + +S    K+++NA D+  +TWN++    G VRN   E  LK
Sbjct: 75  VCNINLIIESLMKIGESGLAKKVLRNASDQNVITWNLM--IGGYVRNVQYEEALK 127


>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 341

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = +2

Query: 530 FKSGSTFDPTNFRPISVLPTLS-KIFEKIILEQLLNHFYSNNLLHNKQY---GFT 682
           +KS   ++   F+ +S+L     K+ E  +LE+  + F++NN+L  +QY   GFT
Sbjct: 109 YKSVEEYNSELFKIVSILRLCGEKVTENDMLEKTFSTFHANNVLLQQQYRAKGFT 163


>At3g47910.1 68416.m05224 expressed protein low similarity to
           nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
           GI:189036; contains Pfam profiles PF04780: Protein of
           unknown function (DUF629), PF04781: Protein of unknown
           function (DUF627)
          Length = 1290

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 533 KSGSTFDPTNFRPISVLPTLSKIFEKI--ILEQLLNHFYSNNLLHNKQYGFT 682
           K    F P +  PIS  P  +K+ EKI    EQL+ H Y     H+K   FT
Sbjct: 503 KLSIAFPPPDGWPISDDPERAKLLEKIRAAFEQLIRHKYLAASHHDKVIQFT 554


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
           hydrolase-related contains Pfam profiles PF00443:
           Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
           of unknown function (DUF629), PF04781: Protein of
           unknown function (DUF627)
          Length = 1568

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +2

Query: 533 KSGSTFDPTNFRPISVLPTLSKIFEKI--ILEQLLNHFYSNNLLHNKQYGFT 682
           K   TF P +  PIS  P  +K+ EKI    E L+ H Y     H+K   FT
Sbjct: 463 KLSITFPPPDGWPISDDPERAKLLEKIRAAFELLIRHKYLAASHHDKVIQFT 514


>At3g06435.1 68416.m00743 Expressed protein
          Length = 200

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -2

Query: 185 VIILSLIFKIDSALLFLTFPVSLLMIFQVILIL 87
           V+I+S++F I   L+ L FPV     F V+LIL
Sbjct: 119 VLIISVVFGI-FVLVQLVFPVERFYFFYVVLIL 150


>At1g07230.1 68414.m00769 phosphoesterase family protein low
           similarity to SP|P95246 Phospholipase C 2 precursor (EC
           3.1.4.3) {Mycobacterium tuberculosis}; contains Pfam
           profile PF04185: Phosphoesterase family
          Length = 533

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 211 FERYFADIPASTTKS*FHLLPSPNHYC 291
           F+R+FA +P ST  + F++  + +H C
Sbjct: 162 FDRWFASVPTSTQPNRFYVHSATSHGC 188


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,215,323
Number of Sequences: 28952
Number of extensions: 295335
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1746037600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)