Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10584
(468 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 121 5e-29
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 117 1e-27
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 29 0.47
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 28 0.62
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 1.1
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 1.4
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 27 1.9
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb... 26 2.5
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 26 3.3
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 26 3.3
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 4.4
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 4.4
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 25 5.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 5.8
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 121 bits (292), Expect = 5e-29
Identities = 50/83 (60%), Positives = 67/83 (80%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 186 KIHKRSKIKPFVKVVNYNHLMPT 254
+I KRS++KPF+KV+NYNHLMPT
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPT 83
Score = 38.3 bits (85), Expect = 6e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 305 DPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
+P++R + + FEE+Y++GK+ WFF LRF
Sbjct: 103 EPSQRSAAKKTVKNTFEEKYQTGKSAWFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 117 bits (281), Expect = 1e-27
Identities = 48/83 (57%), Positives = 66/83 (79%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 186 KIHKRSKIKPFVKVVNYNHLMPT 254
+I +RS++KPF+KVVNYNHLMPT
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPT 83
Score = 44.0 bits (99), Expect = 1e-05
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = +2
Query: 287 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
+A K+P +R R + FEE+Y+SGK+ WFF LRF
Sbjct: 97 TADTFKEPTQRSAARKTVKKTFEEKYQSGKSAWFFTPLRF 136
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 28.7 bits (61), Expect = 0.47
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 93 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIH-KRSKIKPFVKVVNYNHLMPTVIQLT 269
DE ++ + V +D YP N H K S + F+ N+ PT IQLT
Sbjct: 649 DEDCNESTNMLSLVGYMDSYPEATSNIQKMNSYHIKDSNKENFLSTTKVNNNSPTTIQLT 708
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 28.3 bits (60), Expect = 0.62
Identities = 9/32 (28%), Positives = 21/32 (65%)
Frame = +3
Query: 3 KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 98
K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 47 KLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 12 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 95
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 27.1 bits (57), Expect = 1.4
Identities = 17/73 (23%), Positives = 26/73 (35%)
Frame = -1
Query: 405 NLSFWKNHLFFPLLYLSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*LLASSDYSLQ 226
N+ FW F P L+ + LKR G + + L + + S L
Sbjct: 278 NVLFWVIQFFVPYLFTLILDAKALKRRTRGIIGLTIQAVVIMATLSGELGWIVSKHIDLH 337
Query: 225 PSRKALSWTSCGF 187
+ L WT G+
Sbjct: 338 DTSPDLDWTQRGY 350
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 26.6 bits (56), Expect = 1.9
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 373 EEQVVLPEA*VLSVILKENKRYVSNEKKKKKK 468
E QVV+ + + ILKE ++Y+ N KK KK
Sbjct: 250 ENQVVVNDYRQMDKILKEERQYLLNMCKKIKK 281
>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 225
Score = 26.2 bits (55), Expect = 2.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 177 GKNKIHKRSKIKPFVKVVNYNH 242
G + I R K P K+VNYNH
Sbjct: 28 GNHWIFARFKFYPLNKIVNYNH 49
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 3.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 112 LSEVPSS*FLTTIALRPAYRPLKTSTTLPG 23
L E+P + F T+ AY P S T+ G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 25.8 bits (54), Expect = 3.3
Identities = 15/38 (39%), Positives = 19/38 (50%)
Frame = -2
Query: 206 LGPLVDFILSHPLVHFPGVPVDTSDESMPVRLVGGTFV 93
LGP+ + + L HFP DT + S P GGT V
Sbjct: 1364 LGPIGETFEVNGLSHFPSDIEDTIERSHPRIARGGTAV 1401
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 4.4
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 269 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 403
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.4 bits (53), Expect = 4.4
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +2
Query: 251 NSYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 379
+S + F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 146 HSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.0 bits (52), Expect = 5.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 159 KVHKRMGKNKIHKRSKIKPFVKVV 230
K+ KR+G I SK+ P VK+V
Sbjct: 205 KIAKRIGFTDISLSSKLTPMVKIV 228
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 5.8
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 263 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 361
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,866,590
Number of Sequences: 5004
Number of extensions: 37023
Number of successful extensions: 131
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 178394480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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