Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10584
(468 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 141 2e-34
SB_5553| Best HMM Match : Toxin_20 (HMM E-Value=4.6) 33 0.12
SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016) 31 0.36
SB_41829| Best HMM Match : DUF1649 (HMM E-Value=0) 29 1.9
SB_10224| Best HMM Match : DUF1649 (HMM E-Value=0) 29 1.9
SB_1501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.4
SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81) 28 4.4
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18) 28 4.4
SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91) 28 4.4
SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.9
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 27 5.9
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 27 7.7
SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32) 27 7.7
SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32) 27 7.7
SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.7
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 141 bits (342), Expect = 2e-34
Identities = 62/83 (74%), Positives = 72/83 (86%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 186 KIHKRSKIKPFVKVVNYNHLMPT 254
+ KRSK+KPFVKV NYNHLMPT
Sbjct: 61 RTAKRSKVKPFVKVFNYNHLMPT 83
Score = 52.8 bits (121), Expect = 1e-07
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 2/85 (2%)
Frame = +2
Query: 152 PPESAQEDGKE*NPQEVQDKAFREGCKL*SLDANSYTVDFSFEKFSA-KDL-KDPAKRKK 325
P + + GK+ + + K F + L Y+VD +K KD+ +DPA +KK
Sbjct: 50 PLKVTKRMGKKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKK 109
Query: 326 LRFNTRVRFEERYKSGKNKWFFQKL 400
+ EERYKSGKNKWFFQKL
Sbjct: 110 ALREVKSTLEERYKSGKNKWFFQKL 134
>SB_5553| Best HMM Match : Toxin_20 (HMM E-Value=4.6)
Length = 299
Score = 33.1 bits (72), Expect = 0.12
Identities = 21/78 (26%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Frame = +2
Query: 161 SAQEDGKE*NP--QEVQDKAFREGCKL*SLDANSYTVDFSFEKFSAKDLKDP-AKRKKLR 331
SA++ GK+ P ++++DK E +AN ++ + FS ++LKD K+ ++
Sbjct: 8 SAEKKGKDGKPTKKQLKDKNKPE-------EANDVIINIGLKVFSEEELKDKRGKKLAIK 60
Query: 332 FNTRVRFEERYKSGKNKW 385
N ++E + K+KW
Sbjct: 61 VNKHASYKELLEQAKSKW 78
>SB_3083| Best HMM Match : zf-CCHC (HMM E-Value=0.0016)
Length = 295
Score = 31.5 bits (68), Expect = 0.36
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Frame = -1
Query: 360 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*LLASSDYSLQPSRKALSWTSCGFYS 181
L S+ K+++ A S + A + + L+S L+S+ S++ K CG
Sbjct: 91 LLSEENLTFKKAY-DIASSMETTAQHMADLQSAPSTLSSTSASVKSENKECY--RCGKNH 147
Query: 180 FPSSCALSGGTCRYQRRK-HARTAC 109
PS C TC Y ++K H C
Sbjct: 148 HPSKCRFKEATCHYCKKKGHIVAKC 172
>SB_41829| Best HMM Match : DUF1649 (HMM E-Value=0)
Length = 218
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 239 SLDANSYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGK-NKWFFQK 397
S+D + +DF++ + + DL KR+ L F +R + +SG+ + F+QK
Sbjct: 52 SVDVDCDFIDFTYVRCDSDDLDSSLKRQVLGFKDALRGNKGSRSGQISLEFYQK 105
>SB_10224| Best HMM Match : DUF1649 (HMM E-Value=0)
Length = 218
Score = 29.1 bits (62), Expect = 1.9
Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 239 SLDANSYTVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGK-NKWFFQK 397
S+D + +DF++ + + DL KR+ L F +R + +SG+ + F+QK
Sbjct: 52 SVDVDCDFIDFTYVRCDSDDLDSSLKRQVLGFKDALRGNKGSRSGQISLEFYQK 105
>SB_1501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 78
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +2
Query: 245 DANSYTVDFSFEKFSAKDLKDP-AKRKKLRFNTRVRFEERYKSGKNKW 385
+AN ++ + FS ++LKD K+ ++ N ++ + K+KW
Sbjct: 20 EANDVIINIGLKVFSEEELKDKRGKKLAIKVNKHASYKGLLEQAKSKW 67
>SB_48554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 2.5
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = -1
Query: 228 QPSRKALSWTSCGFYSFPSSCALSGGTCRY-QRRKHARTAC 109
QP + A S GFYS+ + C C Y ++ H ++ C
Sbjct: 97 QPVKPARSNNCGGFYSYTTECPAKEKICNYCKKPNHFKSVC 137
>SB_36666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 114
Score = 28.3 bits (60), Expect = 3.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 243 SDYSLQPSRKALSWTSCG 190
S Y ++P K+L W SCG
Sbjct: 2 SSYRIKPKNKSLGWVSCG 19
>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 290 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
+KDL + P +K FN + E R++ G K F+++LRF
Sbjct: 2 SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42
>SB_39090| Best HMM Match : zf-piccolo (HMM E-Value=0.81)
Length = 245
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 351 KRTRVLKRSFLRFAGSFRSFALNFSKL 271
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 100 KNTKELQ-TFLGFASYYRSFVKNFSKV 125
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 351 KRTRVLKRSFLRFAGSFRSFALNFSKL 271
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 598 KNTKELQ-TFLGFASYYRSFVKNFSKV 623
>SB_57833| Best HMM Match : RnaseH (HMM E-Value=0.18)
Length = 366
Score = 27.9 bits (59), Expect = 4.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 351 KRTRVLKRSFLRFAGSFRSFALNFSKL 271
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVKNFSKV 86
>SB_56455| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 325
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +3
Query: 93 DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYN 239
D+ D Y + AG+ + + HK+ G K + KP +K VN N
Sbjct: 198 DDDIDDDEYHPGYSAGLKKRLKAAHKQRGYTKAFAKRGTKP-MKEVNSN 245
>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
Length = 383
Score = 27.9 bits (59), Expect = 4.4
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 278 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 403
++ S D +D +KRK++RF FE + YK+ FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281
>SB_4267| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 297
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 351 KRTRVLKRSFLRFAGSFRSFALNFSKL 271
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 61 KNTKELQ-TFLGFASYYRSFVENFSKV 86
>SB_24332| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 117
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -3
Query: 148 LSIPATKACPYGLSEVPSS*FLTTIALRP--AYRPLKTSTTLPGFIIL 11
+S+ A+ + PY +P+S FL ++ P Y+PL P + L
Sbjct: 13 VSLQASASYPYKPPRIPTSLFLVSLQAPPLYTYKPLPRIPASPSLVFL 60
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 27.5 bits (58), Expect = 5.9
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -1
Query: 351 KRTRVLKRSFLRFAGSFRSFALNFSKL 271
K T+ L+ +FL FA +RSF NFSK+
Sbjct: 677 KNTKELQ-TFLGFASYYRSFVENFSKV 702
>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 248 ANSYTVDFSFEKFSAKDLKDPAKRKKL-RFNTRVRFEERYK 367
AN+ T+DF E +AK + D ++KKL + +V+ E + K
Sbjct: 332 ANTLTIDFDIE-VTAKGMTDDERKKKLDEYVNKVKAETQGK 371
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 287 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 403
SAK+L++ +RK+ +NT E RY+ K K Q R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599
>SB_27987| Best HMM Match : RVT_1 (HMM E-Value=4.8e-32)
Length = 779
Score = 27.1 bits (57), Expect = 7.7
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Frame = -1
Query: 360 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*LLASSDYSLQ-----PSRKALSWTS 196
L S+ K+++ A S + A + + L+S L+S+ S++ PS ++ S
Sbjct: 149 LLSEENLTFKKAY-DIASSMETTAQHMADLQSAPSTLSSTSASVKKVSSSPSPRSKSENK 207
Query: 195 ----CGFYSFPSSCALSGGTCRYQRRK-HARTAC 109
CG PS C TC Y ++K H C
Sbjct: 208 ECYRCGKNHHPSKCRFKEATCHYCKKKGHIVAKC 241
>SB_23220| Best HMM Match : RVT_1 (HMM E-Value=3.8e-32)
Length = 1597
Score = 27.1 bits (57), Expect = 7.7
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 10/94 (10%)
Frame = -1
Query: 360 LSSKRTRVLKRSFLRFAGSFRSFALNFSKLKSTV*LLASSDYSLQ-----PSRKALSWTS 196
L S+ K+++ A S + A + + L+S L+S+ S++ PS ++ S
Sbjct: 149 LLSEENLTFKKAY-DIASSMETTAQHMADLQSAPSTLSSTSASVKKVSSSPSPRSKSENK 207
Query: 195 ----CGFYSFPSSCALSGGTCRYQRRK-HARTAC 109
CG PS C TC Y ++K H C
Sbjct: 208 ECYRCGKNHHPSKCRFKEATCHYCKKKGHIVAKC 241
>SB_4457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1328
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +2
Query: 245 DANSYTVDFSFEKFSAKDLKDP-AKRKKLRFNTRVRFEERYKSGKNK 382
+AN ++ + FS ++LKD K+ ++ N ++E + K+K
Sbjct: 799 EANDVIINIGLKVFSEEELKDKRGKKLAIKVNKHASYKELLEQAKSK 845
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,924,039
Number of Sequences: 59808
Number of extensions: 275283
Number of successful extensions: 877
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 969807871
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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