Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10584
(468 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 134 2e-32
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 134 2e-32
AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical ... 32 0.24
AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical ... 32 0.24
AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical ... 32 0.24
Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical pr... 30 0.95
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.3
AF016683-3|AAB66193.1| 497|Caenorhabditis elegans Hypothetical ... 28 2.9
Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical pr... 28 3.8
U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon gu... 28 3.8
U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon gu... 28 3.8
AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr pro... 28 3.8
Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical pr... 27 5.1
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 5.1
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 5.1
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 5.1
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr... 27 6.7
AL132948-2|CAC51076.2| 496|Caenorhabditis elegans Hypothetical ... 27 6.7
Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kin... 27 8.9
U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical pr... 27 8.9
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 134 bits (325), Expect = 2e-32
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 186 KIHKRSKIKPFVKVVNYNHLMPT 254
KI KR+K+KPF+KVV+Y HL+PT
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPT 83
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 YTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
Y+VD +F+K + + LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 85 YSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 134 bits (325), Expect = 2e-32
Identities = 61/83 (73%), Positives = 70/83 (84%)
Frame = +3
Query: 6 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 186 KIHKRSKIKPFVKVVNYNHLMPT 254
KI KR+K+KPF+KVV+Y HL+PT
Sbjct: 61 KIEKRNKLKPFLKVVSYTHLLPT 83
Score = 61.3 bits (142), Expect = 3e-10
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Frame = +2
Query: 257 YTVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
Y+VD +F+K + + LK P+K++K + +FEERYK+GKNKWFF KLRF
Sbjct: 85 YSVDVAFDKTNINKEALKAPSKKRKALVEVKSKFEERYKTGKNKWFFTKLRF 136
>AF000263-3|AAL77185.1| 697|Caenorhabditis elegans Hypothetical
protein T08B2.7c protein.
Length = 697
Score = 31.9 bits (69), Expect = 0.24
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTVIQLTSALKNS 287
AG++R ++ + NK KR KI K YNHL+PT+ SA+KN+
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPTIDY--SAMKNA 458
>AF000263-2|AAK21464.1| 755|Caenorhabditis elegans Hypothetical
protein T08B2.7b protein.
Length = 755
Score = 31.9 bits (69), Expect = 0.24
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTVIQLTSALKNS 287
AG++R ++ + NK KR KI K YNHL+PT+ SA+KN+
Sbjct: 386 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPTIDY--SAMKNA 432
>AF000263-1|AAK21462.1| 781|Caenorhabditis elegans Hypothetical
protein T08B2.7a protein.
Length = 781
Score = 31.9 bits (69), Expect = 0.24
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTVIQLTSALKNS 287
AG++R ++ + NK KR KI K YNHL+PT+ SA+KN+
Sbjct: 412 AGVERGQNQIATHL--NKQVKRRKINKLEKERIYNHLVPTIDY--SAMKNA 458
>Z81043-1|CAB02799.1| 755|Caenorhabditis elegans Hypothetical
protein C29F3.1 protein.
Length = 755
Score = 29.9 bits (64), Expect = 0.95
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 135 AGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTVIQLTSALKNS 287
AG++R V + N+ KR KI + YNHL+PT+ SA+KN+
Sbjct: 386 AGVERGQNHVATHL--NRQLKRQKISKLEREKIYNHLVPTIDY--SAMKNA 432
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.3
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +3
Query: 12 KIMKPGKVVLVLSGRYAGRKAIVVK 86
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>AF016683-3|AAB66193.1| 497|Caenorhabditis elegans Hypothetical
protein K09F6.2 protein.
Length = 497
Score = 28.3 bits (60), Expect = 2.9
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -3
Query: 466 FFFFFFHYSRNVYF 425
FF FFFH+S NV+F
Sbjct: 475 FFCFFFHFSLNVFF 488
>Z68117-2|CAA92178.1| 333|Caenorhabditis elegans Hypothetical
protein F45E6.4 protein.
Length = 333
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -1
Query: 285 NFSKLKSTV*LLASSDYSLQPSRKALSWTSCGFYS--FPSSC 166
N S T LAS++Y + P + A ++ +CG + FP +C
Sbjct: 184 NLSHRIGTFIALASANYGMCPCQHAFAFPACGMETGFFPGTC 225
>U41016-7|ABC71807.1| 476|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform a protein.
Length = 476
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHL--MPTVIQLT 269
SD P A I R+ + +R+G + K PFVK +++NH+ P I++T
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVT 399
>U41016-6|ABC71808.1| 474|Caenorhabditis elegans Sensory axon
guidance protein 1,isoform b protein.
Length = 474
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHL--MPTVIQLT 269
SD P A I R+ + +R+G + K PFVK +++NH+ P I++T
Sbjct: 343 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVT 399
>AF275634-1|AAF91417.1| 469|Caenorhabditis elegans SAX-1 Ndr
protein kinase protein.
Length = 469
Score = 27.9 bits (59), Expect = 3.8
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHL--MPTVIQLT 269
SD P A I R+ + +R+G + K PFVK +++NH+ P I++T
Sbjct: 336 SDVPISIEAKATIKRFCCEAERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVT 392
>Z81540-9|CAD89742.1| 740|Caenorhabditis elegans Hypothetical
protein F46B3.17 protein.
Length = 740
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/23 (52%), Positives = 12/23 (52%)
Frame = -1
Query: 72 PCDPRTGHLRPALLYPASLSYPS 4
P D TGH RPAL P PS
Sbjct: 550 PLDSGTGHSRPALFAPPRAQLPS 572
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 354 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV*LLASS 241
S+ T V + +SFL G +R F LNF+++ S++ L S+
Sbjct: 1250 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISA 1288
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 354 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV*LLASS 241
S+ T V + +SFL G +R F LNF+++ S++ L S+
Sbjct: 1153 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISA 1191
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = -1
Query: 354 SKRTRVLK-RSFLRFAGSFRSFALNFSKLKSTV*LLASS 241
S+ T V + +SFL G +R F LNF+++ S++ L S+
Sbjct: 1164 SRPTNVKELQSFLGLVGYYRKFILNFAQIASSLTSLISA 1202
>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical
protein F20B10.1 protein.
Length = 1180
Score = 27.1 bits (57), Expect = 6.7
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = -1
Query: 246 SSDYSLQPSRKALSWTSCGFYSFPSSCALSGGTCRYQR 133
SS YS + + L W YS SCA++ G+C + R
Sbjct: 607 SSWYSTRSDKHGLQWGEAPPYSRMCSCAIN-GSCLHNR 643
>AL132948-2|CAC51076.2| 496|Caenorhabditis elegans Hypothetical
protein Y39B6A.2 protein.
Length = 496
Score = 27.1 bits (57), Expect = 6.7
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 180 KNKIHKRSKIKPFVKVVNYNHLMPTVIQLT 269
+ K+HK+ K ++ NY +PT++++T
Sbjct: 200 QQKLHKKYAFKMLLEFYNYVKSLPTMVEIT 229
>Z34989-1|CAA84441.1| 404|Caenorhabditis elegans Ndr protein kinase
protein.
Length = 404
Score = 26.6 bits (56), Expect = 8.9
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 105 SDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSKIKPFVKVVNYNHL--MPTVIQLT 269
SD P A I R+ + +R+G + K PFVK +++NH+ P I++T
Sbjct: 285 SDVPISIEAKATIKRFCCERERRLGNHGGLDEIKQCPFVKRIDWNHIRERPPPIRVT 341
>U42848-3|AAA83609.1| 693|Caenorhabditis elegans Hypothetical
protein C31H1.1 protein.
Length = 693
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +3
Query: 264 LTSALKNSAQKT*KTLQNVRSCVSTREYVLK 356
L AL+NSAQK L ++ + VST Y L+
Sbjct: 651 LFDALQNSAQKCGVALSDLMTAVSTSSYSLE 681
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,241,931
Number of Sequences: 27780
Number of extensions: 201924
Number of successful extensions: 706
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 706
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 839684522
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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