Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10584
         (468 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)           110   5e-25
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...   107   3e-24
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)           107   4e-24
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    30   0.68 
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    30   0.68 
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    29   1.2  
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    29   1.2  
At4g34630.1 68417.m04918 expressed protein                             29   1.6  
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)...    27   4.8  
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)...    27   4.8  
At4g37090.1 68417.m05254 expressed protein                             27   8.4  
At3g23320.1 68416.m02941 hypothetical protein                          27   8.4  

>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score =  110 bits (264), Expect = 5e-25
 Identities = 48/93 (51%), Positives = 66/93 (70%)
 Frame = +3

Query: 6   MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
           M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 186 KIHKRSKIKPFVKVVNYNHLMPTVIQLTSALKN 284
           K  K+S++K F KV+NY H+MPT   L   LKN
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKN 93



 Score = 48.0 bits (109), Expect = 3e-06
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 125 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDANSYTVDFSFEKF-SAKDL 301
           C     ++ P +  ++D  +   ++ + K F +      +    YT+D   +   SA  +
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAI 100

Query: 302 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
               K+       + +FEER+K+GKN+WFF KLRF
Sbjct: 101 SSKDKKVTALKEAKAKFEERFKTGKNRWFFTKLRF 135


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score =  107 bits (258), Expect = 3e-24
 Identities = 47/95 (49%), Positives = 67/95 (70%)
 Frame = +3

Query: 6   MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
           M K +K  K V++L GRYAG+KA+++K++D+GTSD+ YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 186 KIHKRSKIKPFVKVVNYNHLMPTVIQLTSALKNSA 290
           K  K+S++K F+K+VNY HLMPT   L   LK  A
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = +2

Query: 125 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDANSYTVDFSFEKFSAKD-L 301
           C     ++ P +  ++D  +   ++ + K F +      L    YT+D   ++ +  D L
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100

Query: 302 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
           K   K+       + + EER+K+GKN+WFF KLRF
Sbjct: 101 KSKDKKVTALKEAKAKLEERFKTGKNRWFFTKLRF 135


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score =  107 bits (257), Expect = 4e-24
 Identities = 46/95 (48%), Positives = 66/95 (69%)
 Frame = +3

Query: 6   MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 185
           M K +K  K V++L GRYAG+KA+++K++D+G  D+PYGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 186 KIHKRSKIKPFVKVVNYNHLMPTVIQLTSALKNSA 290
           K  K+S++K F+K+VNY HLMPT   L   LK  A
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVA 95



 Score = 47.6 bits (108), Expect = 4e-06
 Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
 Frame = +2

Query: 125 CFRRWYRQVPPESAQEDGKE*NPQEVQDKAFREGCKL*SLDANSYTVDFSFEKFSAKD-L 301
           C     ++ P +  ++D  +   ++ + K F +      L    YT+D   ++ +  D L
Sbjct: 41  CLVAGLKKYPSKVIRKDSAKKTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDAL 100

Query: 302 KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 406
           +   K+       + + EER+K+GKN+WFF KLRF
Sbjct: 101 QSKDKKVAALKEAKAKLEERFKTGKNRWFFTKLRF 135


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 332 FNTRVRFEERYKSGKNKWFF 391
           +N R + E+RYKS K KWF+
Sbjct: 58  YNKRNKKEQRYKSPKGKWFY 77


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 30.3 bits (65), Expect = 0.68
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 3   KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 101
           K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 84  KLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 3   KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 101
           K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 84  KLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +3

Query: 3   KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 101
           K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 84  KLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At4g34630.1 68417.m04918 expressed protein
          Length = 199

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 93  DEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHKRSK 206
           D+G  D+ Y  ++    +  PR V K++G+ ++ K  K
Sbjct: 130 DDGEEDREYDDSYDLDEELVPRSVSKKVGRQRMRKLGK 167


>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 78  VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMPT 254
           V ++   GT+  P+     A   R+P K+ +R+ +N+   ++S+++    V         
Sbjct: 57  VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116

Query: 255 VIQLTSALKNSAQK 296
           +IQL   L  + Q+
Sbjct: 117 LIQLEQELDRARQQ 130


>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +3

Query: 78  VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK-IHKRSKIKPFVKVVNYNHLMPT 254
           V ++   GT+  P+     A   R+P K+ +R+ +N+   ++S+++    V         
Sbjct: 57  VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNREAARKSRLRKKAYVQQLETSRLK 116

Query: 255 VIQLTSALKNSAQK 296
           +IQL   L  + Q+
Sbjct: 117 LIQLEQELDRARQQ 130


>At4g37090.1 68417.m05254 expressed protein
          Length = 186

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 373 EEQVVLPEA*VLSVILKENKRYVSNEKKKKKK 468
           +EQ  L E   L  I +ENK  VS EKK+++K
Sbjct: 19  QEQAKLEEE-ALWKIQRENKNRVSREKKERRK 49


>At3g23320.1 68416.m02941 hypothetical protein 
          Length = 191

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 17  NEAG*SSAGLKWPVRGSQG 73
           N AG   +GL+W +R SQG
Sbjct: 46  NHAGRQDSGLRWIIRNSQG 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,642,937
Number of Sequences: 28952
Number of extensions: 189632
Number of successful extensions: 595
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 583
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 791932800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)