Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10583
         (825 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...   136   6e-31
UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Anther...    66   8e-10
UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase fr...    48   4e-04
UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Re...    44   0.005
UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase fr...    40   0.100
UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-direct...    37   0.70 
UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-direct...    35   2.8  
UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile...    34   3.8  

>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-like
            protein; n=9; cellular organisms|Rep: Endonuclease and
            reverse transcriptase-like protein - Bombyx mori (Silk
            moth)
          Length = 960

 Score =  136 bits (329), Expect = 6e-31
 Identities = 62/71 (87%), Positives = 65/71 (91%)
 Frame = +2

Query: 35   SPESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTSERYFDKAMRHDNHLIVADADY 214
            S +SRFCRLAVGAPWFVRNVDLHDDLGLESI+K+M S SERYFDKAMRHDN LIVA ADY
Sbjct: 842  SLQSRFCRLAVGAPWFVRNVDLHDDLGLESIRKHMKSVSERYFDKAMRHDNRLIVAAADY 901

Query: 215  SPNPDHARASH 247
            SPNPDHA ASH
Sbjct: 902  SPNPDHAGASH 912


>UniRef50_Q4W4D1 Cluster: Reverse transcriptase-like; n=1; Antheraea
           mylitta|Rep: Reverse transcriptase-like - Antheraea
           mylitta (Tasar silkworm)
          Length = 186

 Score = 66.5 bits (155), Expect = 8e-10
 Identities = 29/71 (40%), Positives = 43/71 (60%)
 Frame = +2

Query: 41  ESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTSERYFDKAMRHDNHLIVADADYSP 220
           ++R  R   G PW++R VDLH +L + SI  Y+ S +  YF+KA  H + L+V+ A+Y P
Sbjct: 55  QNRVLRKVTGTPWYIRRVDLHRNLEIPSIWTYVKSLTISYFEKAANHPSPLVVSAANYQP 114

Query: 221 NPDHARASHHP 253
            P+ AR    P
Sbjct: 115 VPNAARPRRRP 125


>UniRef50_Q9NBX4 Cluster: Probable RNA-directed DNA polymerase from
           transposon X-element; n=1; Drosophila melanogaster|Rep:
           Probable RNA-directed DNA polymerase from transposon
           X-element - Drosophila melanogaster (Fruit fly)
          Length = 908

 Score = 47.6 bits (108), Expect = 4e-04
 Identities = 22/54 (40%), Positives = 29/54 (53%)
 Frame = +2

Query: 41  ESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTSERYFDKAMRHDNHLIVA 202
           +++  RL  G  WFVRN  LH DL L ++   +   S RY D+  RH N L  A
Sbjct: 825 QNKVARLITGCEWFVRNTTLHRDLKLATVFDEINKHSSRYHDRLERHRNRLASA 878


>UniRef50_Q961V7 Cluster: GH03753p; n=5; melanogaster subgroup|Rep:
           GH03753p - Drosophila melanogaster (Fruit fly)
          Length = 888

 Score = 44.0 bits (99), Expect = 0.005
 Identities = 17/51 (33%), Positives = 30/51 (58%)
 Frame = +2

Query: 41  ESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTSERYFDKAMRHDNHL 193
           +SR  R+  GAPW++RN ++H DL ++ + + +     +Y +K   H N L
Sbjct: 816 QSRILRIITGAPWYLRNENIHRDLKIKLVIEVIAEKKTKYNEKLTTHTNPL 866


>UniRef50_Q95SX7 Cluster: Probable RNA-directed DNA polymerase from
           transposon BS; n=7; melanogaster subgroup|Rep: Probable
           RNA-directed DNA polymerase from transposon BS -
           Drosophila melanogaster (Fruit fly)
          Length = 906

 Score = 39.5 bits (88), Expect = 0.100
 Identities = 18/54 (33%), Positives = 31/54 (57%)
 Frame = +2

Query: 41  ESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTSERYFDKAMRHDNHLIVA 202
           ++R  R     P++VR   LH DL L ++++ ++  + RY D+  RH  H I+A
Sbjct: 831 QNRAMRAITDCPYYVRGTTLHRDLNLHTVEEQISRHTSRYSDRLRRH--HSILA 882


>UniRef50_UPI0000D578AF Cluster: PREDICTED: similar to RNA-directed
            DNA polymerase from mobile element jockey (Reverse
            transcriptase); n=7; Tribolium castaneum|Rep: PREDICTED:
            similar to RNA-directed DNA polymerase from mobile
            element jockey (Reverse transcriptase) - Tribolium
            castaneum
          Length = 1336

 Score = 36.7 bits (81), Expect = 0.70
 Identities = 13/37 (35%), Positives = 25/37 (67%)
 Frame = +2

Query: 41   ESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTS 151
            +++F R A  APWFVRN  LH ++ + +++++   T+
Sbjct: 1298 QNKFLRQAFNAPWFVRNNQLHREVKMPTMEEFFRETA 1334


>UniRef50_UPI0000D576CB Cluster: PREDICTED: similar to RNA-directed
           DNA polymerase from mobile element jockey (Reverse
           transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to RNA-directed DNA polymerase from mobile
           element jockey (Reverse transcriptase) - Tribolium
           castaneum
          Length = 494

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 13/58 (22%), Positives = 31/58 (53%)
 Frame = +2

Query: 41  ESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTSERYFDKAMRHDNHLIVADADY 214
           +++  R    APWF+RN +L  DL + +++ ++   ++ + ++    +N  +    DY
Sbjct: 420 QNKIIRQISNAPWFIRNKNLEKDLKIPNLKDFIKKLNQDFANRTGTSNNPSLTYTIDY 477


>UniRef50_P21328 Cluster: RNA-directed DNA polymerase from mobile
            element jockey; n=4; Drosophiliti|Rep: RNA-directed DNA
            polymerase from mobile element jockey - Drosophila
            melanogaster (Fruit fly)
          Length = 916

 Score = 34.3 bits (75), Expect = 3.8
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
 Frame = +2

Query: 41   ESRFCRLAVGAPWFVRNVDLHDDLGLESIQKYMTSTSERYFDKAMRHDNHL-------IV 199
            +++  R   GAPW++R  D+  DL +  +   + + +++Y ++   H N L        V
Sbjct: 830  QAKTLRRISGAPWYMRTRDIERDLKVPKLGDKLQNIAQKYMERLNVHPNSLARKLGTAAV 889

Query: 200  ADADYSPNPDHARASHHP 253
             +AD           HHP
Sbjct: 890  VNADPRTRVKRRLKRHHP 907


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 722,084,746
Number of Sequences: 1657284
Number of extensions: 13236717
Number of successful extensions: 30066
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 29168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30063
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 71324098314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)