Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10583
         (825 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    29   0.059
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    29   0.059
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    24   1.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   2.9  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.1  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   9.0  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 0.059
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 515 TETWLENGSVHKHQAFAFHSSLKFWHTHDGL 423
           T+  ++ G+  ++Q  A ++   FWH H GL
Sbjct: 219 TQCPIQQGNTFRYQWIAGNAGTHFWHAHTGL 249


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 28.7 bits (61), Expect = 0.059
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 515 TETWLENGSVHKHQAFAFHSSLKFWHTHDGL 423
           T+  ++ G+  ++Q  A ++   FWH H GL
Sbjct: 219 TQCPIQQGNTFRYQWIAGNAGTHFWHAHTGL 249


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 650 YLGLVDLIRENKNLAVKYH 594
           Y GL+D I+  + L +K+H
Sbjct: 551 YKGLIDRIKSREKLTMKFH 569


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 5/26 (19%)
 Frame = -2

Query: 488 VHKHQAFAFH-----SSLKFWHTHDG 426
           +H    F +H     S   FWH+H G
Sbjct: 157 IHPGMTFRYHFNVHNSGTHFWHSHSG 182


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 723 SPRRYDTCTTVRISCDCSNTEE 788
           S RRY    T R +CDC N +E
Sbjct: 281 SQRRY----TGRATCDCPNCQE 298


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 250 MVTGSCVIRIRGVVSVGNDKVI 185
           M+ G  ++ I G+VS   +KV+
Sbjct: 2   MLKGLALLSILGIVSAATNKVV 23


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,570
Number of Sequences: 336
Number of extensions: 3465
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)