Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10583
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    30   1.9  
11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754           30   2.6  
11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,223...    28   7.8  

>10_08_0573 + 18872720-18872781,18873261-18873610,18873917-18874334,
            18875172-18877180,18877390-18877398,18880291-18880398,
            18880399-18880469,18880769-18881785
          Length = 1347

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = +2

Query: 554  CNCRRFSLKACPHSDISPRGF-YSRVLNQLNLSNCTSLYC 670
            CN   FS++ CP     P G  + R L  L + +C  L C
Sbjct: 1220 CNLSHFSVRHCPQLHKLPSGIRHLRALEDLEIIDCGQLTC 1259



 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = +2

Query: 554 CNCRRFSLKACPHSDISPRGFYS-RVLNQLNLSNCTSLYC 670
           CN  RFS+K CP     P G    R L  + +  C  L C
Sbjct: 880 CNLTRFSVKHCPQLLQLPNGLQRLRELEDMEVVGCGKLTC 919


>11_01_0299 - 2241760-2241990,2242958-2243331,2243427-2243754
          Length = 310

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +2

Query: 506 MSLFSGQVG-LFDYE*ICNCRRFSLKACPHSDISPRGFYSRV 628
           + L  G++  L  Y   C CRR  L  CPHSD     +YS+V
Sbjct: 117 LELEEGRIAQLISYR-CCRCRRRPLPKCPHSDF----YYSKV 153


>11_01_0298 - 2231063-2232015,2232124-2232798,2232918-2232946,
            2233053-2233513,2233593-2233717,2233801-2234098,
            2235004-2236234,2236562-2237233,2237329-2238539
          Length = 1884

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 554  CNCRRFSLKACPHSD 598
            C CRR ++  CPHSD
Sbjct: 1591 CRCRRRAIPKCPHSD 1605


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,211,823
Number of Sequences: 37544
Number of extensions: 359381
Number of successful extensions: 884
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)