Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10580
(483 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0630 + 19104678-19105463,19106169-19106348,19107775-191078... 101 3e-22
09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841 101 4e-22
08_02_1315 + 26083856-26083945,26084093-26084226,26084753-260848... 101 4e-22
09_04_0633 - 19123930-19124009,19124240-19124344,19124453-191245... 97 7e-21
08_02_1238 + 25486263-25487574,25488210-25489117 28 3.4
03_02_0203 + 6370729-6370850,6371213-6371391,6371516-6371625,637... 27 6.0
12_02_0542 - 20166044-20166111,20166399-20166526,20166613-201666... 27 7.9
08_02_1245 - 25557201-25558199 27 7.9
04_04_0687 - 27262742-27262784,27263429-27263584,27263698-272637... 27 7.9
03_05_0796 + 27787401-27788831 27 7.9
03_05_0398 + 23790257-23790323,23791116-23791339,23792208-237922... 27 7.9
>09_04_0630 +
19104678-19105463,19106169-19106348,19107775-19107864,
19108777-19108958,19109968-19109974,19111763-19111833,
19112188-19112224,19112433-19112603
Length = 507
Score = 101 bits (242), Expect = 3e-22
Identities = 47/74 (63%), Positives = 58/74 (78%)
Frame = +1
Query: 34 ETYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPN 213
+TY+M + P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPN
Sbjct: 319 DTYEMVV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPN 377
Query: 214 IGYGSNKKTRHMLP 255
IGYGS+KKTRH LP
Sbjct: 378 IGYGSDKKTRHYLP 391
Score = 41.5 bits (93), Expect = 3e-04
Identities = 17/25 (68%), Positives = 20/25 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNR 320
Y PN F+K +VHNV ELE+LMM NR
Sbjct: 389 YLPNKFKKFVVHNVSELELLMMHNR 413
>09_04_0632 - 19121654-19121783,19121910-19122091,19122752-19122841
Length = 133
Score = 101 bits (241), Expect = 4e-22
Identities = 49/67 (73%), Positives = 54/67 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRMYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 126
Query: 426 LRSQENE 446
LRSQE+E
Sbjct: 127 LRSQEDE 133
Score = 97.1 bits (231), Expect = 7e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 226 SNKKTRHMLP 255
S+KKTRH LP
Sbjct: 60 SDKKTRHYLP 69
>08_02_1315 +
26083856-26083945,26084093-26084226,26084753-26084819,
26085011-26085192,26085315-26085444
Length = 200
Score = 101 bits (241), Expect = 4e-22
Identities = 49/67 (73%), Positives = 54/67 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I VTN AR
Sbjct: 134 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVVTNKLAR 193
Query: 426 LRSQENE 446
LRSQE+E
Sbjct: 194 LRSQEDE 200
Score = 70.9 bits (166), Expect = 5e-13
Identities = 29/38 (76%), Positives = 35/38 (92%)
Frame = +1
Query: 142 NWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 255
+WR+P+GID+RVRR+FKG LMPNIGYGS+KKTRH LP
Sbjct: 99 SWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLP 136
Score = 29.9 bits (64), Expect = 1.1
Identities = 17/31 (54%), Positives = 20/31 (64%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLK 138
MA+ P+ IVKKR K+F R SDRY LK
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYLCLK 30
>09_04_0633 -
19123930-19124009,19124240-19124344,19124453-19124543,
19124647-19124709,19126318-19126368,19126878-19126962,
19127102-19127283,19128493-19128582
Length = 248
Score = 97.1 bits (231), Expect = 7e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
MA+ P+ IVKKR K+F R SDRY LK +WR+P+GID+RVRR+FKG LMPNIGYG
Sbjct: 1 MAV-PLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
Query: 226 SNKKTRHMLP 255
S+KKTRH LP
Sbjct: 60 SDKKTRHYLP 69
Score = 82.2 bits (194), Expect = 2e-16
Identities = 38/55 (69%), Positives = 44/55 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVT 410
Y PN F+K +VHNV ELE+LMM NR YCAEIAH VS+KKRK IVERA QL I ++
Sbjct: 67 YLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVIS 121
>08_02_1238 + 25486263-25487574,25488210-25489117
Length = 739
Score = 28.3 bits (60), Expect = 3.4
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -2
Query: 386 GSFHDQLPLL----RRDTVSDLCAVLPVLHHQ 303
G+ H+Q P L RRD V+D+ A L +HH+
Sbjct: 466 GAVHEQRPALSWESRRDIVADVAAGLHYVHHE 497
>03_02_0203 +
6370729-6370850,6371213-6371391,6371516-6371625,
6372721-6373575
Length = 421
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 338 RSRCLFEEAEADRGKSPAAQHQSDECGRSPPVP 436
RS ++A+RG SPAA H D SP P
Sbjct: 40 RSSTSRRHSDANRGNSPAAPHSLDIYISSPAAP 72
>12_02_0542 -
20166044-20166111,20166399-20166526,20166613-20166686,
20166934-20166995,20167903-20168098,20168106-20169086
Length = 502
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Frame = +2
Query: 269 GPSSQC*RAGNLDDAKQEVLRRDRSRCLFEEAEAD-RGKSPAAQHQSDE 412
GP S G LD K V RRD +R L +A + AA SDE
Sbjct: 35 GPGSFADEHGELDQEKFAVSRRDAARRLIAAVDATLLARRAAAGEGSDE 83
>08_02_1245 - 25557201-25558199
Length = 332
Score = 27.1 bits (57), Expect = 7.9
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = -1
Query: 213 VGHQVLTL-ESPADSVVNTSRFTPIPLKFVIAIRLMPDKSLRPLFDDCRPVNRSYSHLVC 37
+G +++ L P D V++T F K + + DK+ D C P ++H +
Sbjct: 153 IGCRIVYLCREPKDVVISTWHFMN---KVIEGFSIDFDKAFELFVDGCSPFGPIWNHYLG 209
Query: 36 FFKKRDSEP 10
++ K EP
Sbjct: 210 YWNKHVEEP 218
>04_04_0687 -
27262742-27262784,27263429-27263584,27263698-27263783,
27263881-27264188,27265337-27265455,27265989-27266075,
27266440-27266546
Length = 301
Score = 27.1 bits (57), Expect = 7.9
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 437 LGPEASGRIRHSDAELLGSFHDQL 366
L PE S R +S A+LL FH QL
Sbjct: 30 LNPETSARAANSFAKLLARFHVQL 53
>03_05_0796 + 27787401-27788831
Length = 476
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 359 EAEADRGKSPAAQHQSDECGR 421
+ ++D GK QH+ DECG+
Sbjct: 393 DGDSDVGKMKIVQHKCDECGK 413
>03_05_0398 +
23790257-23790323,23791116-23791339,23792208-23792275,
23794738-23794980,23795108-23795237,23797235-23797954
Length = 483
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -1
Query: 282 CELGPYGIHWEHMTGLLVGTVT 217
C LG + HW+H T L+ +T
Sbjct: 79 CILGYFAFHWDHATALISQALT 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,492,844
Number of Sequences: 37544
Number of extensions: 251061
Number of successful extensions: 901
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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