Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10580
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   1e-27
SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.16 
SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)                  30   0.87 
SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)               30   0.87 
SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)               28   3.5  
SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)                   28   3.5  
SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)                  28   4.6  
SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)                   27   6.1  
SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)       27   6.1  
SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_10137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 133

 Score =  119 bits (287), Expect = 1e-27
 Identities = 51/68 (75%), Positives = 60/68 (88%)
 Frame = +1

Query: 52  IRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSN 231
           + PV RP I+KKR K+FIRHQSDRY ++  +WRKP+GIDNRVRRRFKGQYLMPNIGYGSN
Sbjct: 2   VMPVNRPRILKKRQKKFIRHQSDRYMRVGESWRKPKGIDNRVRRRFKGQYLMPNIGYGSN 61

Query: 232 KKTRHMLP 255
           KKTR ++P
Sbjct: 62  KKTRFLMP 69



 Score =  107 bits (256), Expect = 6e-24
 Identities = 50/65 (76%), Positives = 58/65 (89%)
 Frame = +3

Query: 252 PNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLR 431
           P+GF+K +VHNVKELE+LMM NR Y AEIAH VSS+KRK IVERAQQLSI+VTN+ ARLR
Sbjct: 69  PDGFKKFVVHNVKELEVLMMMNRSYAAEIAHNVSSRKRKAIVERAQQLSIKVTNSNARLR 128

Query: 432 SQENE 446
           S+ENE
Sbjct: 129 SEENE 133


>SB_48455| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 622

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
 Frame = -1

Query: 267 YGIHWEHMTGLLVGTVTDV--GHQV--LTLESPADSVVNTSRFTPIPLKFVIAIRLMPDK 100
           YG H   M G  + T+TD+   H+V  L +E  A  ++ T++FTP  + F+ A  +    
Sbjct: 491 YGTHEGAMYGTKLDTITDIIENHKVAILDVEPQALKILRTAKFTPY-VVFISAPSIKGIN 549

Query: 99  SLRPLFDDCRPVNRSYSHLVCFFKKRD 19
            +RP   +  P   +   L    K+ D
Sbjct: 550 DIRPPVANHEPAEDAGESLKRLAKESD 576


>SB_24924| Best HMM Match : WHEP-TRS (HMM E-Value=1.1)
          Length = 1002

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 314 KQEVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 445
           +Q ++   R  C   +A    G  P+  H+  + GR  PVPG+R
Sbjct: 774 QQRLIEHHRKNCPRLQATIRFGPDPSVAHRYRKQGRPVPVPGKR 817


>SB_16698| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 839

 Score = 30.3 bits (65), Expect = 0.87
 Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 216 RLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHG-VSSKKRKLI 374
           +L+ Q+  PS  P  + +++V  ++E E+     RK+C EIA+  V S  R+++
Sbjct: 271 KLKCQKYWPSANPEEYGRLVVTPLEEEELSHYVIRKFCIEIANSDVESPAREIV 324


>SB_10798| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 888

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 308 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 445
           D+KQ EV R +    +F+ A      S    H+  + GR  PVPG+R
Sbjct: 662 DSKQLEVFREEWDGVVFDAAIEKAHPSDIVAHRYRKQGRPVPVPGKR 708


>SB_35866| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.34)
          Length = 758

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = +3

Query: 180 QAIQGSILDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRK 323
           + ++G++   +  +++Q+E     P G RK +   ++ELE ++    K
Sbjct: 594 KVLKGTLEITEGEVKYQREHTGRTPKGKRKEIWREIRELETILKDVHK 641


>SB_28214| Best HMM Match : Drf_FH1 (HMM E-Value=3.8)
          Length = 361

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = -2

Query: 404 SDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHH 306
           S+ E  GSF D++   RRDT S +C    +L H
Sbjct: 300 SETERGGSFLDEVASPRRDTASPVCLWGAILFH 332


>SB_13751| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 20/75 (26%), Positives = 34/75 (45%)
 Frame = +1

Query: 37  TYKMAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 216
           +YK++ +P  +P  +     + +   SD+ DK+K    K +    RV    KG+     +
Sbjct: 14  SYKISAKPKSKPAPLDISAAQAMTSNSDKNDKMKVTTPKSKLGHRRVDE--KGETTYKKV 71

Query: 217 GYGSNKKTRHMLPMD 261
           G  S K  R +L  D
Sbjct: 72  GRLSAKPERDVLMQD 86


>SB_37512| Best HMM Match : DnaJ (HMM E-Value=1.3e-29)
          Length = 291

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 23/82 (28%), Positives = 42/82 (51%)
 Frame = +3

Query: 201 LDAQHRLRFQQEDPSYAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVE 380
           LDA+ R +F+QE        F  VLV +++E E    Q ++   EIA  + ++  +L  E
Sbjct: 85  LDAK-RKKFKQEKHLLYNLEFSPVLVLDLEESEKSAKQEKESDEEIARRLQAEIERLREE 143

Query: 381 RAQQLSIRVTNAAARLRSQENE 446
            ++ L  +     A++R +E +
Sbjct: 144 GSRLLQEQQELLKAQIREEEQK 165


>SB_30037| Best HMM Match : ANATO (HMM E-Value=0.035)
          Length = 124

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 372 SASASSKRHRERSLRSTSCFASSRFPAL*HCEL 274
           S   + +R  +RS + ++C AS R P+   CEL
Sbjct: 21  STEHAYQRRTKRSSKESACCASGRMPSRARCEL 53


>SB_19511| Best HMM Match : Glycos_transf_1 (HMM E-Value=6.2e-23)
          Length = 496

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -2

Query: 461 IQLYLFV--LLGPEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVLPVLHHQDFQLF 288
           +QL  F   L G   S R ++    L+GS  +Q    R D + +L   L +  H DF L 
Sbjct: 319 LQLKAFAEFLKGQPKSSRSQYK-LVLIGSCRNQDDADRVDNLRELAKSLSIRKHVDFAL- 376

Query: 287 NIVN*DLTESIGS 249
           N+   +L E IGS
Sbjct: 377 NVSFDELREFIGS 389


>SB_42624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +2

Query: 308 DAKQ-EVLRRDRSRCLFEEAEADRGKSPAAQHQSDECGRSPPVPGER 445
           D+KQ EV R +     F+ A      S    H+  + GR  PVPG+R
Sbjct: 170 DSKQLEVFREEWDGVAFDAAIEQVHPSHIVAHRYRKKGRPVPVPGKR 216


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,514
Number of Sequences: 59808
Number of extensions: 287381
Number of successful extensions: 1144
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)