Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10580
(483 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A) ribo... 103 6e-23
At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B) 100 6e-22
At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B) 100 6e-22
At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam ... 28 3.8
At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family prot... 28 3.8
At4g07670.1 68417.m01203 protease-associated (PA) domain-contain... 27 5.0
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 27 6.6
At4g14740.2 68417.m02267 expressed protein 27 8.8
At4g14740.1 68417.m02266 expressed protein 27 8.8
At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical t... 27 8.8
At3g22810.1 68416.m02875 expressed protein ; expression support... 27 8.8
>At4g18100.1 68417.m02692 60S ribosomal protein L32 (RPL32A)
ribosomal protein L32, human, PIR1:R5HU32
Length = 133
Score = 103 bits (247), Expect = 6e-23
Identities = 48/67 (71%), Positives = 54/67 (80%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
Y PNGF+K +VHN ELE+LMM NR YCAEIAH VS+KKRK IVERA QL + VTN AR
Sbjct: 67 YLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVVTNRLAR 126
Query: 426 LRSQENE 446
LRSQE+E
Sbjct: 127 LRSQEDE 133
Score = 95.9 bits (228), Expect = 1e-20
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 226 SNKKTRHMLP 255
S+KKTRH LP
Sbjct: 60 SDKKTRHYLP 69
>At5g46430.2 68418.m05716 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 100 bits (239), Expect = 6e-22
Identities = 45/67 (67%), Positives = 53/67 (79%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
Y PNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N R
Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126
Query: 426 LRSQENE 446
LRSQE+E
Sbjct: 127 LRSQEDE 133
Score = 95.9 bits (228), Expect = 1e-20
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 226 SNKKTRHMLP 255
S+KKTRH LP
Sbjct: 60 SDKKTRHYLP 69
>At5g46430.1 68418.m05715 60S ribosomal protein L32 (RPL32B)
Length = 133
Score = 100 bits (239), Expect = 6e-22
Identities = 45/67 (67%), Positives = 53/67 (79%)
Frame = +3
Query: 246 YAPNGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAAR 425
Y PNGF+K +VHN ELE+LMM NR YCAEIAH +S+KKRK IVERA QL + V+N R
Sbjct: 67 YLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVVSNKLGR 126
Query: 426 LRSQENE 446
LRSQE+E
Sbjct: 127 LRSQEDE 133
Score = 95.9 bits (228), Expect = 1e-20
Identities = 43/70 (61%), Positives = 56/70 (80%)
Frame = +1
Query: 46 MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 225
MA+ P+ +VKKR+ +FIR QSDR +K +WR+P+GID+RVRR+FKG LMPN+GYG
Sbjct: 1 MAV-PLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYG 59
Query: 226 SNKKTRHMLP 255
S+KKTRH LP
Sbjct: 60 SDKKTRHYLP 69
>At5g51860.1 68418.m06429 MADS-box protein (AGL72) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain);
Length = 211
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = +3
Query: 258 GFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRSQ 437
G +K +V VK++E+L + NRK + S K+ I + ++ V A+L
Sbjct: 90 GLKKEMVTMVKKIEVLEVHNRKMMGQSLDSCSVKELSEIATQIEKSLHMVRLRKAKLYED 149
Query: 438 E 440
E
Sbjct: 150 E 150
>At1g53920.1 68414.m06138 GDSL-motif lipase/hydrolase family protein
similar to Anther-specific proline-rich proteins
SP|P40603 SP|P40602 from {Arabidopsis thaliana};
contains Pfam profile PF00657: GDSL-like
Lipase/Acylhydrolase
Length = 385
Score = 27.9 bits (59), Expect = 3.8
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 103 IRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIG---YGSNKKTRHMLPM 258
+R Q D Y K++R WR G + +R + YL+ +IG Y S T LP+
Sbjct: 146 LRTQLDHYKKVERLWRTNFGKEESKKRISRAVYLI-SIGSNDYSSIFLTNQSLPI 199
>At4g07670.1 68417.m01203 protease-associated (PA) domain-containing
protein similar to PF02225: PA domain; similar to
N-acetylated-alpha-linked acidic dipeptidase II
(NAALADase II) (SP:Q9Y3Q) {Homo sapiens};similar to
Glutamate carboxypeptidase II (Membrane glutamate
carboxypeptidase) (mGCP) (N-acetylated-alpha-linked
acidic dipeptidase I) (NAALADase I)
(Pteroylpoly-gamma-glutamate
carboxypeptidase)(Folylpoly-gamma-glutamate
carboxypeptidase) (FGCP) (Folate hydrolase 1)
(Prostate-specific membrane antigen homolog) (SP|O77564)
{Sus scrofa}
Length = 280
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 49 AIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPR 159
A+ P ++ + +K +++H + R DKL++ KPR
Sbjct: 194 AVDPNSGTAVLMEASKSYLQHIAQRLDKLQKRGWKPR 230
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +3
Query: 267 KVLVHNVKELEILMMQNRKYCAEIAHGVSSKK 362
K LV N+ E ++ Q RK+C I VSS K
Sbjct: 1242 KELVGNMPEAKVRRAQVRKFCGRIFQMVSSLK 1273
>At4g14740.2 68417.m02267 expressed protein
Length = 475
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 437 LGPEASGRIRHSDAELLGSFHDQLPLL--RRDTVSDLC 330
+ P SGR+ HS L GS D P+ D + C
Sbjct: 107 VSPRTSGRLSHSSGPLNGSLTDSPPVSPPESDDIKQFC 144
>At4g14740.1 68417.m02266 expressed protein
Length = 475
Score = 26.6 bits (56), Expect = 8.8
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Frame = -2
Query: 437 LGPEASGRIRHSDAELLGSFHDQLPLL--RRDTVSDLC 330
+ P SGR+ HS L GS D P+ D + C
Sbjct: 107 VSPRTSGRLSHSSGPLNGSLTDSPPVSPPESDDIKQFC 144
>At4g02020.1 68417.m00272 zeste-like protein 1 (EZA1) identical to
enhancer of zeste-like protein 1(EZA1) (GI:4185507)
[Arabidopsis thaliana]; similar to polycomb group
[Arabidopsis thaliana] GI:1903019 (curly leaf); contains
Pfam profile PF00856: SET domain
Length = 856
Score = 26.6 bits (56), Expect = 8.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 33 RNIQDGYKTCLQADNRQKEDE 95
RN+ G KTCL N +E+E
Sbjct: 517 RNLLSGLKTCLDVSNYMRENE 537
>At3g22810.1 68416.m02875 expressed protein ; expression supported
by MPSS
Length = 472
Score = 26.6 bits (56), Expect = 8.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -2
Query: 437 LGPEASGRIRHSDAELLGSFHDQLPL 360
+ P SGR+ HS L GS D P+
Sbjct: 106 VSPRTSGRLSHSSGPLNGSLTDSPPI 131
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,928,077
Number of Sequences: 28952
Number of extensions: 197746
Number of successful extensions: 672
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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