Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10579
(807 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri... 160 9e-40
At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C) 160 1e-39
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila... 159 2e-39
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi... 159 2e-39
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 159 2e-39
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila... 159 2e-39
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con... 47 1e-05
At1g72390.1 68414.m08373 expressed protein 32 0.39
At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A... 29 3.6
At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A... 29 3.6
At3g01450.1 68416.m00069 expressed protein 29 3.6
At3g18530.1 68416.m02357 expressed protein similar to unknown pr... 29 4.8
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi... 28 6.3
At3g59580.1 68416.m06648 RWP-RK domain-containing protein simila... 28 8.4
At2g04050.1 68415.m00386 MATE efflux family protein similar to r... 28 8.4
>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
ribosomal protein S2 - Arabidopsis thaliana,
SWISSPROT:RS2_ARATH
Length = 276
Score = 160 bits (389), Expect = 9e-40
Identities = 73/88 (82%), Positives = 82/88 (93%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GPSL DEV+KIMPVQKQTRAGQRTRFKAF+ +GD+NGH+GLGVKCSKEVATAI
Sbjct: 77 QIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVATAI 136
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+P+RRGYWGNKIG HT
Sbjct: 137 RGAIILAKLSVVPIRRGYWGNKIGKPHT 164
Score = 118 bits (285), Expect = 3e-27
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 686
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 161 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 220
Query: 687 FXXXXXXXXXXXXXXLTPDLWRD 755
F LTP+ W++
Sbjct: 221 FVKATFDCLQKTYGFLTPEFWKE 243
Score = 60.5 bits (140), Expect = 1e-09
Identities = 25/35 (71%), Positives = 32/35 (91%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++WVPVTKLGRLV+EGKI K+E IYL SLP+KE
Sbjct: 41 EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVKE 75
>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
Length = 285
Score = 160 bits (388), Expect = 1e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 86 QIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 145
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 146 RGAIILAKLSVVPVRRGYWGNKIGKPHT 173
Score = 118 bits (285), Expect = 3e-27
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 686
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 170 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 229
Query: 687 FXXXXXXXXXXXXXXLTPDLWRD 755
F LTP+ W++
Sbjct: 230 FVKATFDCLQKTYGFLTPEFWKE 252
Score = 52.8 bits (121), Expect = 3e-07
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++++WVPVTKLGRLV G I ++E IYL SLP+KE
Sbjct: 50 EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVKE 84
>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
to ribosomal protein S2 GI:430711 from [Drosophila
melanogaster]
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 118 bits (285), Expect = 3e-27
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 686
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 687 FXXXXXXXXXXXXXXLTPDLWRD 755
F LTP+ W++
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
to ribosomal protein S2 GI:939717 from [Urechis caupo]
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 118 bits (285), Expect = 3e-27
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 686
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 687 FXXXXXXXXXXXXXXLTPDLWRD 755
F LTP+ W++
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 118 bits (285), Expect = 3e-27
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 686
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 687 FXXXXXXXXXXXXXXLTPDLWRD 755
F LTP+ W++
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
to ribosomal protein S2 GI:939717 from (Urechis caupo)
Length = 284
Score = 159 bits (386), Expect = 2e-39
Identities = 74/88 (84%), Positives = 81/88 (92%), Gaps = 1/88 (1%)
Frame = +1
Query: 256 EIIDFFLGPSLNDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAI 435
+IID +GP+L DEV+KIMPVQKQTRAGQRTRFKAFV +GD NGH+GLGVKCSKEVATAI
Sbjct: 85 QIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVATAI 144
Query: 436 RGAIILAKLSVLPVRRGYWGNKIGS-HT 516
RGAIILAKLSV+PVRRGYWGNKIG HT
Sbjct: 145 RGAIILAKLSVVPVRRGYWGNKIGKPHT 172
Score = 118 bits (285), Expect = 3e-27
Identities = 52/83 (62%), Positives = 63/83 (75%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 686
KPHTVPCKVTGKCGSVTVR++PAPRG+GIV+A VPKK+LQ AG+ D +TS+RGST TLGN
Sbjct: 169 KPHTVPCKVTGKCGSVTVRMVPAPRGSGIVAARVPKKVLQFAGIDDVFTSSRGSTKTLGN 228
Query: 687 FXXXXXXXXXXXXXXLTPDLWRD 755
F LTP+ W++
Sbjct: 229 FVKATFDCLQKTYGFLTPEFWKE 251
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/35 (68%), Positives = 29/35 (82%)
Frame = +2
Query: 149 DQKEWVPVTKLGRLVREGKIDKLESIYLFSLPIKE 253
++ +WVPVTKLGRLV + KI KLE IYL SLP+KE
Sbjct: 49 EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVKE 83
>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
contains Pfam profiles PF03719: Ribosomal protein S5,
C-terminal domain, PF00333: Ribosomal protein S5,
N-terminal domain
Length = 303
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/62 (30%), Positives = 40/62 (64%)
Frame = +1
Query: 292 DEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVL 471
+ V+++ V K + G++ +F+A V +GD G++G+G +KEV A++ + I A+ +++
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEVVAAVQKSAIDARRNIV 208
Query: 472 PV 477
V
Sbjct: 209 QV 210
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 507 KPHTVPCKVTGKCGSVTVRLIPAPRGTGIVSAPVPKKLLQMAGVQDCYTSARGSTGTLGN 686
K T P + G G+ V L PA GTG+++ + +L+MAGV++ GS L N
Sbjct: 214 KYSTFPHRSEGDYGAAKVMLRPASPGTGVIAGGAVRIVLEMAGVENALGKQLGSNNALNN 273
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 32.3 bits (70), Expect = 0.39
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = -1
Query: 726 HMSWQWQHMWL*QNFPRCQLNHELRCSSPVHQPSEE-AS*ELAQTQFQYHEGQESAGLLQ 550
+M+ Q Q L Q + QL H+ + P+ QPS++ A Q Q Q HE + A Q
Sbjct: 920 YMNQQQQQQQLQQQPQQQQLQHQQQLQQPMSQPSQQLAQSPQQQQQLQQHEQPQQAQQQQ 979
Query: 549 NHT 541
T
Sbjct: 980 QAT 982
>At4g13310.2 68417.m02080 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 390
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 571 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSL 738
+ ++++ LCL L + ++ RTAT + +PW + + ++ L H SL
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSL 56
>At4g13310.1 68417.m02081 cytochrome P450 71A20, putative (CYP71A20)
Identical to Cytochrome P450 (SP:Q9T0K2) [Arabidopsis
thaliana]; similar to cytochrome P450 71A4, Solanum
melongena, PIR2:S36805
Length = 497
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +1
Query: 571 LPLVVLELCLRQFLRSFFRWLVYRTATPQLVVQLAPWEILLKPHMLPLPRHMPTSL 738
+ ++++ LCL L + ++ RTAT + +PW + + ++ L H SL
Sbjct: 1 MEMILITLCLTTLLALLLKSILKRTATKNFNLPPSPWRLPVIGNLHQLSLHTHRSL 56
>At3g01450.1 68416.m00069 expressed protein
Length = 326
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/63 (30%), Positives = 28/63 (44%)
Frame = -2
Query: 509 LPILLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPAR 330
L +LL Q L++ + A + VA + H +P + P L P N R+R A
Sbjct: 163 LDLLLTQLLLKSSQDKRFVCEAAEKALVAMTA-HVSPALLLPKLQPFLKNRNPRIRAKAS 221
Query: 329 VCF 321
CF
Sbjct: 222 TCF 224
>At3g18530.1 68416.m02357 expressed protein similar to unknown
protein GB:AAF24615 from [Arabidopsis thaliana]
Length = 297
Score = 28.7 bits (61), Expect = 4.8
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -2
Query: 500 LLPQ*PLRTGKTDNLARIIAPRMAVATSLLHFTPKPI*PLLSPMATNALKRVRCPARVCF 321
LL Q L++ + A R VA + H +P + P L P N R+R A CF
Sbjct: 166 LLTQLLLKSSQDKRFVCEAAERALVAMTT-HVSPALLLPKLRPCLKNKSPRIRAKASACF 224
Query: 320 CTGMIFRTSSFR 285
+G + R + R
Sbjct: 225 -SGCVPRLEAAR 235
>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
transporter ZIP2 [Arabidopsis thaliana]
gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
(Fe2+) permease (ZIP) family, PMID:11500563
Length = 353
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 358 AFVAIGDNNGHIGLGVKCSKE 420
AFVA G NN H+G V S+E
Sbjct: 149 AFVAAGSNNNHVGASVGESRE 169
>At3g59580.1 68416.m06648 RWP-RK domain-containing protein similar
to nodule inception protein [Lotus japonicus]
GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
Length = 894
Score = 27.9 bits (59), Expect = 8.4
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)
Frame = -2
Query: 716 GNGSICGFSKISQGAS*TTS*GVAVLYTSHLKKLLRNW---RRHNSSTTRGRNQPDCYRT 546
GNG++ IS S +++ AVL S L +NW R HN+S G + +
Sbjct: 738 GNGTVEPNHSISSSMSDSSNSSGAVLLGSSSASLEQNWNQIRTHNNSGESGSSSTLTVKA 797
Query: 545 TLAGDLAR 522
T D R
Sbjct: 798 TYREDTVR 805
>At2g04050.1 68415.m00386 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile: PF01554
uncharacterized membrane protein family
Length = 476
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/18 (66%), Positives = 12/18 (66%)
Frame = +3
Query: 513 HTVPCKVTGKCGSVTVRL 566
H VPCK T K G VTV L
Sbjct: 11 HLVPCKDTWKSGQVTVEL 28
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,974,577
Number of Sequences: 28952
Number of extensions: 408785
Number of successful extensions: 1124
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1066
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1121
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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