Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10577X
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 146 2e-36
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 145 3e-36
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 145 3e-36
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 99 3e-22
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 87 1e-18
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 76 3e-15
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 37 0.001
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 33 0.023
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 31 0.071
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.16
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.29
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 29 0.29
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 29 0.38
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 28 0.88
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 28 0.88
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 1.5
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.0
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 25 6.2
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 25 6.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 25 6.2
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 25 6.2
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 8.2
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 146 bits (353), Expect = 2e-36
Identities = 68/78 (87%), Positives = 73/78 (93%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK+GQTREHALLA
Sbjct: 81 ETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISKDGQTREHALLA 140
Query: 181 FTLGVKQLIVGVNKMDST 234
+TLGVKQLIV VNKMD+T
Sbjct: 141 YTLGVKQLIVAVNKMDTT 158
Score = 121 bits (292), Expect = 5e-29
Identities = 51/80 (63%), Positives = 64/80 (80%)
Frame = +3
Query: 252 ARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 431
ARFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 432 GKCLIEALXAILPPARPTDK 491
GK L+EA+ +I PPARPTDK
Sbjct: 223 GKTLLEAIDSIEPPARPTDK 242
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 145 bits (352), Expect = 3e-36
Identities = 67/78 (85%), Positives = 73/78 (93%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA
Sbjct: 81 ETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLA 140
Query: 181 FTLGVKQLIVGVNKMDST 234
+TLGVKQLIV VNKMD+T
Sbjct: 141 YTLGVKQLIVAVNKMDTT 158
Score = 121 bits (292), Expect = 5e-29
Identities = 51/80 (63%), Positives = 64/80 (80%)
Frame = +3
Query: 252 ARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 431
ARFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 432 GKCLIEALXAILPPARPTDK 491
GK L+EA+ +I PPARPTDK
Sbjct: 223 GKTLLEAIDSIEPPARPTDK 242
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 145 bits (352), Expect = 3e-36
Identities = 67/78 (85%), Positives = 73/78 (93%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK+GQTREHALLA
Sbjct: 81 ETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISKDGQTREHALLA 140
Query: 181 FTLGVKQLIVGVNKMDST 234
+TLGVKQLIV VNKMD+T
Sbjct: 141 YTLGVKQLIVAVNKMDTT 158
Score = 121 bits (292), Expect = 5e-29
Identities = 51/80 (63%), Positives = 64/80 (80%)
Frame = +3
Query: 252 ARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 431
ARFEEI KE S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G
Sbjct: 163 ARFEEIVKETSNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVK 222
Query: 432 GKCLIEALXAILPPARPTDK 491
GK L+EA+ +I PPARPTDK
Sbjct: 223 GKTLLEAIDSIEPPARPTDK 242
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 99.1 bits (236), Expect = 3e-22
Identities = 47/102 (46%), Positives = 65/102 (63%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEAG + GQTREHA+LA
Sbjct: 312 ETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLA 371
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSEPDLRKSRRKYPHTSRRLA 306
T G+ L+V +NKMD +SE ++ K RR+A
Sbjct: 372 RTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVA 413
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 87.4 bits (207), Expect = 1e-18
Identities = 41/76 (53%), Positives = 50/76 (65%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
E+ K I DAPGHRDFI MI G S AD AVL+V + FE G +NGQTREHA L
Sbjct: 251 ESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLL 310
Query: 181 FTLGVKQLIVGVNKMD 228
LG+ +++V VNK+D
Sbjct: 311 RALGISEIVVSVNKLD 326
Score = 42.3 bits (95), Expect = 4e-05
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Frame = +3
Query: 255 RFEEIKKEVSSY-IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVERKEGK 425
RF+EIK VS + IK +G+ + V FVPIS G N++ + S W+K
Sbjct: 334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYK---------- 383
Query: 426 ADGKCLIEALXAILPPARPTDK 491
G L+ AL ++PP +P K
Sbjct: 384 --GPTLLSALDQLVPPEKPYRK 403
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 76.2 bits (179), Expect = 3e-15
Identities = 38/84 (45%), Positives = 53/84 (63%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET+ + +D PGH D+IKNMITG + D A+++V+A G+ QTREH LLA
Sbjct: 112 ETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP-------QTREHLLLA 164
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSE 252
+GVKQ++V +NK+D EP E
Sbjct: 165 RQVGVKQIVVYINKVDMVEPDMIE 188
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 37.1 bits (82), Expect = 0.001
Identities = 20/71 (28%), Positives = 34/71 (47%)
Frame = +1
Query: 16 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 195
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 196 KQLIVGVNKMD 228
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 33.1 bits (72), Expect = 0.023
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 168
Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 145 YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 31.5 bits (68), Expect = 0.071
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +1
Query: 16 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
++T +D PGH F G + AD VL+VA G
Sbjct: 221 FITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.16
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIV 108
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 29.5 bits (63), Expect = 0.29
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
Y + +ID PGH DF ++ + + +L+V A G
Sbjct: 124 YLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 29.1 bits (62), Expect = 0.38
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +1
Query: 19 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 198
+ +ID PGH DF + + D AV I+ + AG+ QT+ A G+
Sbjct: 95 INLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV--EAQTKVVWKQATKRGIP 147
Query: 199 QLIVGVNKMD 228
++I VNKMD
Sbjct: 148 KVIF-VNKMD 156
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.88
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 108
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.9 bits (59), Expect = 0.88
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 108
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 1.5
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +1
Query: 247 SEPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSVK 417
+ PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 146 TNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVIS 205
Query: 418 KA 423
++
Sbjct: 206 QS 207
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +1
Query: 28 IDAPGHRDFIKNMITGTSQADCAVLIV 108
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 25.0 bits (52), Expect = 6.2
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 218 TKWIPLNHHTVSQI*GNQEGSILI-HQEDWLQPSCCRFRAH 337
TK++ + H+ +++ + ++I H ED L P+C RAH
Sbjct: 438 TKYVHMAHNYLNEKLSPSQAMVIISHYEDEL-PACVNRRAH 477
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 6.2
Identities = 7/19 (36%), Positives = 15/19 (78%)
Frame = -3
Query: 261 QIWLTVWWFSGIHFVYSYD 205
Q+W+T+W+ S + + Y+Y+
Sbjct: 450 QLWVTLWFLSSLQY-YAYE 467
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 25.0 bits (52), Expect = 6.2
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +3
Query: 273 KEVS---SYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKG 398
KEVS SYI +P +G+ +N+++P + P FKG
Sbjct: 159 KEVSTSKSYISSGYLHPKTSPIFKKNGYATENVVDPISSSPRFKG 203
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 25.0 bits (52), Expect = 6.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 340 LDGTETTCWSLQPKCLGSRDGRWSVKKAKLTENASLK 450
LD + W++QP C + DG A L++NA LK
Sbjct: 149 LDKLKDRLWNVQPTCALTGDGLLE-GLAWLSQNAKLK 184
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 24.6 bits (51), Expect = 8.2
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 19 VTIIDAPGHRDFIKN 63
+T+ID PG DFI N
Sbjct: 89 LTVIDTPGFGDFINN 103
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,148,594
Number of Sequences: 5004
Number of extensions: 44463
Number of successful extensions: 155
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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