Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10577X
         (491 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             105   3e-23
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          100   1e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 60   7e-10
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.055
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.097
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.52 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.2  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.2  
SB_42547| Best HMM Match : AMP-binding (HMM E-Value=1.1e-05)           29   1.6  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   3.6  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.8  
SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)                 28   4.8  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              27   6.4  
SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)                    27   8.4  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  105 bits (251), Expect = 3e-23
 Identities = 47/76 (61%), Positives = 59/76 (77%)
 Frame = +1

Query: 1   ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
           +T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQTREHA+L 
Sbjct: 9   QTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILV 68

Query: 181 FTLGVKQLIVGVNKMD 228
            +LGV QLIV +NK+D
Sbjct: 69  RSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 99.5 bits (237), Expect = 1e-21
 Identities = 43/84 (51%), Positives = 60/84 (71%)
 Frame = +1

Query: 1   ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
           +T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+LA
Sbjct: 218 DTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLA 277

Query: 181 FTLGVKQLIVGVNKMDSTEPPYSE 252
            T GVK L++ VNKMD     ++E
Sbjct: 278 KTAGVKHLVILVNKMDDPTVKWNE 301



 Score = 31.1 bits (67), Expect = 0.52
 Identities = 10/20 (50%), Positives = 18/20 (90%)
 Frame = +3

Query: 255 RFEEIKKEVSSYIKKIGYNP 314
           R+EEIK +++ ++KK+G+NP
Sbjct: 303 RYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 60.5 bits (140), Expect = 7e-10
 Identities = 26/28 (92%), Positives = 27/28 (96%)
 Frame = +1

Query: 1   ETSKYYVTIIDAPGHRDFIKNMITGTSQ 84
           ET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 33  ETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 49.6 bits (113), Expect = 1e-06
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 6/49 (12%)
 Frame = +3

Query: 357 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALXAILPPARPT 485
           NM+  +++MPWFK W +ER      KE  A G  L E L +ILPP+RP+
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPS 101


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.055
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +1

Query: 19  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 198
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 199 QLIVGVNKMD 228
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.097
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 28  IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 207
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 208 VGVNKMD 228
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 24/85 (28%), Positives = 36/85 (42%)
 Frame = +1

Query: 19  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 198
           +  +D PGH  F      G    D  +++VAA             QT+E    A   GV 
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191

Query: 199 QLIVGVNKMDSTEPPYSEPDLRKSR 273
            +I  +NK+D    P + PD  K++
Sbjct: 192 PIIFAINKIDK---PNANPDNIKTQ 213


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +1

Query: 25  IIDAPGHRDFIKNMITGTSQADCAVLIV 108
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +1

Query: 19  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_42547| Best HMM Match : AMP-binding (HMM E-Value=1.1e-05)
          Length = 529

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 267 FPQIWLTVWWFSGIHFVYSYDELFDT 190
           + + W   W FSGI    +YDE+ DT
Sbjct: 54  YAEFWEMFWTFSGIIHSQTYDEVIDT 79


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +3

Query: 345 WHGDNMLEPSTKMPWFKGWQVERKE 419
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 13  YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 401 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 291
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_34580| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.88)
          Length = 953

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 17/69 (24%), Positives = 30/69 (43%)
 Frame = +1

Query: 121 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPDLRKSRRKYPHTSRR 300
           G +++GI    + + H +   TLG + L    +       P   P  R++  +  HT + 
Sbjct: 646 GAWQSGIELTERRKRHFVSCNTLGRRSLASRRDSRACARAPKMPPPERQALARLRHTHQS 705

Query: 301 LATTQLLSL 327
              T L+SL
Sbjct: 706 RKATLLVSL 714


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 19  VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 162
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVK 143


>SB_9476| Best HMM Match : RuvB_N (HMM E-Value=0.35)
          Length = 848

 Score = 27.1 bits (57), Expect = 8.4
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 351 GDNMLEPSTKMPWFKGWQVERKEGKADGK 437
           GDN  + S+++PWF   Q ++ + KAD K
Sbjct: 191 GDNTSKVSSEVPWFN--QRQKPKDKADSK 217


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.131    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,475,103
Number of Sequences: 59808
Number of extensions: 348166
Number of successful extensions: 998
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1050596726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)