Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10577X
(491 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 144 4e-35
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 144 4e-35
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 144 4e-35
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 144 4e-35
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 97 4e-21
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 89 2e-18
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 66 9e-12
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 65 3e-11
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 38 0.003
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 38 0.003
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 38 0.005
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 37 0.006
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 36 0.011
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 33 0.079
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 33 0.079
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.14
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.14
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 31 0.32
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 31 0.32
At3g01360.1 68416.m00057 expressed protein contains Pfam profile... 30 0.74
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.74
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 30 0.74
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 30 0.97
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 0.97
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 0.97
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.3
At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containi... 28 3.0
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 3.0
At1g47840.1 68414.m05325 hexokinase, putative similar to hexokin... 27 5.2
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 27 5.2
At4g20430.1 68417.m02981 subtilase family protein contains Pfam ... 27 6.9
At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein s... 27 6.9
At5g27540.1 68418.m03297 GTP-binding protein-related low similar... 27 9.1
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 27 9.1
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 27 9.1
At5g13650.2 68418.m01585 elongation factor family protein contai... 27 9.1
At5g13650.1 68418.m01584 elongation factor family protein contai... 27 9.1
At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger) fa... 27 9.1
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 27 9.1
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 144 bits (348), Expect = 4e-35
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLA
Sbjct: 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 140
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSE 252
FTLGVKQ+I NKMD+T P YS+
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSK 164
Score = 83.0 bits (196), Expect = 1e-16
Identities = 42/80 (52%), Positives = 53/80 (66%)
Frame = +3
Query: 252 ARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 431
AR++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E ST + W+K
Sbjct: 165 ARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------ 212
Query: 432 GKCLIEALXAILPPARPTDK 491
G L+EAL I P RP+DK
Sbjct: 213 GPTLLEALDQINEPKRPSDK 232
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (348), Expect = 4e-35
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLA
Sbjct: 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 140
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSE 252
FTLGVKQ+I NKMD+T P YS+
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSK 164
Score = 83.0 bits (196), Expect = 1e-16
Identities = 42/80 (52%), Positives = 53/80 (66%)
Frame = +3
Query: 252 ARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 431
AR++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E ST + W+K
Sbjct: 165 ARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------ 212
Query: 432 GKCLIEALXAILPPARPTDK 491
G L+EAL I P RP+DK
Sbjct: 213 GPTLLEALDQINEPKRPSDK 232
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (348), Expect = 4e-35
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLA
Sbjct: 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 140
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSE 252
FTLGVKQ+I NKMD+T P YS+
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSK 164
Score = 83.0 bits (196), Expect = 1e-16
Identities = 42/80 (52%), Positives = 53/80 (66%)
Frame = +3
Query: 252 ARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 431
AR++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E ST + W+K
Sbjct: 165 ARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------ 212
Query: 432 GKCLIEALXAILPPARPTDK 491
G L+EAL I P RP+DK
Sbjct: 213 GPTLLEALDQINEPKRPSDK 232
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 144 bits (348), Expect = 4e-35
Identities = 67/84 (79%), Positives = 75/84 (89%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK+GQTREHALLA
Sbjct: 81 ETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLA 140
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSE 252
FTLGVKQ+I NKMD+T P YS+
Sbjct: 141 FTLGVKQMICCCNKMDATTPKYSK 164
Score = 83.0 bits (196), Expect = 1e-16
Identities = 42/80 (52%), Positives = 53/80 (66%)
Frame = +3
Query: 252 ARFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKAD 431
AR++EI KEVSSY+KK+GYNP + FVPISG+ GDNM+E ST + W+K
Sbjct: 165 ARYDEIIKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYK------------ 212
Query: 432 GKCLIEALXAILPPARPTDK 491
G L+EAL I P RP+DK
Sbjct: 213 GPTLLEALDQINEPKRPSDK 232
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 97.5 bits (232), Expect = 4e-21
Identities = 46/84 (54%), Positives = 58/84 (69%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G + GQTREH LA
Sbjct: 175 ETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLA 234
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSE 252
TLGV +LIV VNKMD +S+
Sbjct: 235 KTLGVSKLIVVVNKMDDPTVNWSK 258
Score = 36.7 bits (81), Expect = 0.008
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +3
Query: 255 RFEEIKKEVSSYIKKIGYNPAA-VAFVPISGWHGDNMLEPSTK--MPWFKG 398
R++EI++++ ++K GYN V F+PISG G NM + + PW+ G
Sbjct: 260 RYDEIEQKMVPFLKASGYNTKKDVVFLPISGLMGKNMDQRMGQEICPWWSG 310
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 89.0 bits (211), Expect = 2e-18
Identities = 38/76 (50%), Positives = 55/76 (72%), Gaps = 1/76 (1%)
Frame = +1
Query: 4 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK-NGQTREHALLA 180
+ +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG GQTREHA +
Sbjct: 314 SKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDNLKGQTREHARVL 373
Query: 181 FTLGVKQLIVGVNKMD 228
GV+Q+IV +NKMD
Sbjct: 374 RGFGVEQVIVAINKMD 389
Score = 32.7 bits (71), Expect = 0.14
Identities = 19/80 (23%), Positives = 38/80 (47%), Gaps = 1/80 (1%)
Frame = +3
Query: 255 RFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNML-EPSTKMPWFKGWQVERKEGKAD 431
RF+ IK+ V S+++ + +++ ++P+S N++ PS W
Sbjct: 397 RFDLIKQHVGSFLQSCRFKDSSLTWIPLSAMENQNLVAAPSDNR--LSSWY--------Q 446
Query: 432 GKCLIEALXAILPPARPTDK 491
G CL++A+ ++ P R K
Sbjct: 447 GPCLLDAVDSVKSPDRDVSK 466
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 66.5 bits (155), Expect = 9e-12
Identities = 33/81 (40%), Positives = 48/81 (59%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET+K + +D PGH D++KNMITG +Q D +L+V+ G QT+EH LLA
Sbjct: 126 ETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGPMP-------QTKEHILLA 178
Query: 181 FTLGVKQLIVGVNKMDSTEPP 243
+GV L+ +NK+D + P
Sbjct: 179 RQVGVPSLVCFLNKVDVVDDP 199
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 64.9 bits (151), Expect = 3e-11
Identities = 32/79 (40%), Positives = 46/79 (58%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
ET + +D PGH D++KNMITG +Q D A+L+V+ G QT+EH LLA
Sbjct: 138 ETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-------QTKEHILLA 190
Query: 181 FTLGVKQLIVGVNKMDSTE 237
+GV ++V +NK D +
Sbjct: 191 KQVGVPDMVVFLNKEDQVD 209
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 4 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 183
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 184 TLGVKQLIVGVNKMD 228
+ +K +I+ NK+D
Sbjct: 178 MMRLKHIIILQNKID 192
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 38.3 bits (85), Expect = 0.003
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +1
Query: 4 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAF 183
T + +V+ +D PGH + M+ G + D A+L++AA QT EH
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAANES------CPQPQTAEHLASVD 177
Query: 184 TLGVKQLIVGVNKMD 228
+ +K +I+ NK+D
Sbjct: 178 MMRLKHIIILQNKID 192
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 37.5 bits (83), Expect = 0.005
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 16 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 195
+V+ +D PGH + M+ G + D A+LI+AA QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 196 KQLIVGVNKMD 228
K +I+ NK+D
Sbjct: 174 KDIIIIQNKID 184
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 16 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 195
+V+ +D PGH + M+ G + D A+L++AA QT EH + +
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSEHLAAVEIMQL 175
Query: 196 KQLIVGVNKMD 228
K +I+ NK+D
Sbjct: 176 KHIIILQNKID 186
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 36.3 bits (80), Expect = 0.011
Identities = 28/93 (30%), Positives = 44/93 (47%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
E S Y + +ID PGH DF + S A+L+V A G QT + LA
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG-------VQAQTVANFYLA 183
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSEPDLRKSRRK 279
F + ++ +NK+D P ++P+ K++ K
Sbjct: 184 FEANL-TIVPVINKIDQ---PTADPERVKAQLK 212
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.079
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 4 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 33.5 bits (73), Expect = 0.079
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 4 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
+ Y I+D PGH +F M AD AVLIV A G
Sbjct: 206 SKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.14
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 19 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 32.7 bits (71), Expect = 0.14
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 123
Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 74 YSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 31.5 bits (68), Expect = 0.32
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 168
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 31.5 bits (68), Expect = 0.32
Identities = 17/52 (32%), Positives = 25/52 (48%)
Frame = +1
Query: 13 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 168
Y V IID PGH DF + D A+L++ + G I+ + Q R +
Sbjct: 133 YKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRY 184
>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 319
Score = 30.3 bits (65), Expect = 0.74
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 28 IDAPGHRDFIKNMITGTSQADCAV-LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 204
I GH D+ + T Q +C + L+V TG F +KNG R+ LG +
Sbjct: 226 IKCKGHGDYHRAKAIATLQFNCHLALMVVVATGLFSVIANKNGYLRQDHSKYRPLGAELE 285
Query: 205 IVGVNKMDSTE 237
+ +DS E
Sbjct: 286 NLSTFTLDSDE 296
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 30.3 bits (65), Expect = 0.74
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 204
+ID PGH F G+S D A+L+V + + G+ QT E +L + +
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV-----DIKHGLEP--QTIE-SLNLLRMRNTEF 756
Query: 205 IVGVNKMD 228
I+ +NK+D
Sbjct: 757 IIALNKVD 764
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 30.3 bits (65), Expect = 0.74
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 19 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 198
+ +ID PGH F G++ D A+L+V + G+ QT E L VK
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV-----DIMRGLEP--QTIESLNLLRRRNVK 610
Query: 199 QLIVGVNKMD 228
I+ +NK+D
Sbjct: 611 -FIIALNKVD 619
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 29.9 bits (64), Expect = 0.97
Identities = 26/86 (30%), Positives = 43/86 (50%)
Frame = +1
Query: 1 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLA 180
E + + + +ID PGH DF + + + A+L+V A G EA QT + LA
Sbjct: 148 EDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG-VEA------QTLANVYLA 200
Query: 181 FTLGVKQLIVGVNKMDSTEPPYSEPD 258
+ ++I +NK+D P +EP+
Sbjct: 201 LENNL-EIIPVLNKIDL---PGAEPE 222
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIV 108
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 0.97
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 25 IIDAPGHRDFIKNMITGTSQADCAVLIV 108
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 1.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 7 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 108
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At3g43240.1 68416.m04564 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 747
Score = 28.3 bits (60), Expect = 3.0
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 299 DWLQPSCCRFRAHFWMARRQHVGAFNQNALVQGM 400
DW+ C AHF RR +GAF A G+
Sbjct: 687 DWVNCGSCGEWAHFGCDRRPGLGAFKDYAKTDGL 720
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +1
Query: 28 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 207
+D PGH F G D A+++VAA G QT E A+ ++
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG-------IRPQTNE-AIAHAKAAAVPIV 608
Query: 208 VGVNKMD 228
+ +NK+D
Sbjct: 609 IAINKID 615
>At1g47840.1 68414.m05325 hexokinase, putative similar to hexokinase
1 [Arabidopsis thaliana] Swiss-Prot:Q42525
Length = 493
Score = 27.5 bits (58), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 363 LEPSTKMPWFKGWQVERKEGKADGKCLIEALXA 461
++ T W KG++V EGK CL EA+ A
Sbjct: 189 IDSGTLSKWTKGFKVSGMEGKNVVACLNEAMEA 221
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 27.5 bits (58), Expect = 5.2
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 261 EEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKC 440
EE++ + +G NP VP + W D P T W G E + D
Sbjct: 532 EELRAKKKQMEMMMGNNPQETVIVPKATWMSDGSHWPGT---WSSG---ETDNSRGDHAG 585
Query: 441 LIEALXAILPPARP 482
+I+A+ A P A P
Sbjct: 586 IIQAMLA-PPNAEP 598
>At4g20430.1 68417.m02981 subtilase family protein contains Pfam
profile: PF00082 subtilase family
Length = 856
Score = 27.1 bits (57), Expect = 6.9
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = -3
Query: 201 LFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSIN 28
+FDT E L G+ F +TGT ++ IS GS D L I+VS+ N
Sbjct: 714 IFDTSFEDYMSFLCGINGSAPVVFNYTGTNCLRNNATIS--GS-DLNLPSITVSKLNN 768
>At3g20440.1 68416.m02588 glycoside hydrolase family 13 protein
similar to 1,4-alpha-glucan branching enzyme [Solanum
tuberosum] GI:1621012, 1,4-alpha-glucan branching enzyme
(EC 2.4.1.18) from [Homo sapiens] SP|Q04446, {Solanum
tuberosum} SP|P30924; contains Pfam profiles: PF00128
Alpha amylase catalytic domain, PF02922 Isoamylase
N-terminal domain
Length = 777
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 258 FEEIKKEVSSYIKKIGYNPAAVAFVP 335
FEE K+V ++K+ GYN + VP
Sbjct: 264 FEEFTKKVLPHVKRAGYNAIQLIGVP 289
>At5g27540.1 68418.m03297 GTP-binding protein-related low similarity
to Mig-2-like GTPase Mtl [Drosophila melanogaster]
GI:7271872; contains Pfam profile PF00036: EF hand
Length = 648
Score = 26.6 bits (56), Expect = 9.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 7 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 141
++Y +D PG ++ ++ G + LIVAA T F +
Sbjct: 2 ARYAAGAVDCPGSPKSVRIVVVGDKGTGKSSLIVAAATDSFPPNV 46
>At5g24280.1 68418.m02856 expressed protein ; expression supported
by MPSS
Length = 1634
Score = 26.6 bits (56), Expect = 9.1
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 173 KACSRV*PFLEIPASNSPVPAATMSTAQSA*EVPVIMFLMKS 48
K+C RV F+++ A SP P+ T +Q+ V + F KS
Sbjct: 507 KSCRRVKCFVDLDAGFSPTPSKTDLASQNPFSVALRNFGSKS 548
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 26.6 bits (56), Expect = 9.1
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -3
Query: 168 MLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLA 7
++ + + D F+G + +I LRG+ HVLDE RS++D VL+
Sbjct: 343 LIEEIMIGEDKLIHFSGC-EMGQACSIVLRGASHHVLDE--AERSLHDALCVLS 393
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 26.6 bits (56), Expect = 9.1
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +1
Query: 19 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 198
V IID PGH DF + + D +L+V + G QTR A G
Sbjct: 148 VNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMP-------QTRFVLKKALEFG-H 199
Query: 199 QLIVGVNKMD 228
++V VNK+D
Sbjct: 200 AVVVVVNKID 209
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 26.6 bits (56), Expect = 9.1
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +1
Query: 19 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 198
V IID PGH DF + + D +L+V + G QTR A G
Sbjct: 147 VNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMP-------QTRFVLKKALEFG-H 198
Query: 199 QLIVGVNKMD 228
++V VNK+D
Sbjct: 199 AVVVVVNKID 208
>At4g14220.1 68417.m02194 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 371
Score = 26.6 bits (56), Expect = 9.1
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = +1
Query: 106 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNK 222
+AA + +++ ISK+ Q + LLA VK+L GV +
Sbjct: 261 LAAASAKYKESISKSKQGLKEKLLARNNSVKELSKGVQR 299
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 26.6 bits (56), Expect = 9.1
Identities = 8/35 (22%), Positives = 19/35 (54%)
Frame = +3
Query: 258 FEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNM 362
+ IKK++ ++ +I Y + + + GW G ++
Sbjct: 177 YTRIKKKLRYFLNRINYEQSLIDAYSLEGWKGSSL 211
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.131 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,609,615
Number of Sequences: 28952
Number of extensions: 243474
Number of successful extensions: 762
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 858708096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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