Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10576
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   2.2  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.1  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/47 (21%), Positives = 26/47 (55%)
 Frame = +2

Query: 290 CPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVN 430
           CP+  ++  ++  + K     + +GK  + ++C +S+  S+++I  N
Sbjct: 377 CPICNKRFMRSDHLAKHVKTHNGNGKKGSSDSCSDSEENSQSDITNN 423



 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/44 (20%), Positives = 25/44 (56%)
 Frame = +3

Query: 93  CPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEI 224
           CP+  ++  ++  + K     + +GK  + ++C +S+  S+++I
Sbjct: 377 CPICNKRFMRSDHLAKHVKTHNGNGKKGSSDSCSDSEENSQSDI 420


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 1/66 (1%)
 Frame = +2

Query: 326 CVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQCSPMTC-SKKDGPKICPLVE 502
           CV K+   +      V RE C       E      CV      + C  KKD      L E
Sbjct: 120 CVTKDEPFRPHPHNLVGREGCKKGVCTMEINSDTMCVTFSNLGIQCVKKKDIESALRLRE 179

Query: 503 EKPAKP 520
           E    P
Sbjct: 180 EIKVDP 185


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,038
Number of Sequences: 336
Number of extensions: 4305
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)