Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10576
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3 |Sc...    28   1.4  
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    28   1.4  
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos...    28   1.4  
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p...    27   3.2  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    26   4.2  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    26   4.2  
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    26   5.6  
SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    25   7.4  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    25   7.4  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   9.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   9.8  
SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces po...    25   9.8  

>SPCC1442.10c |rpb3||DNA-directed RNA polymerase II subunit 3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 297

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 72  KKDGPRICPLVEEKSCKAGCVCKEGYLKD 158
           K  GP IC L +E+     C+ K+G  K+
Sbjct: 139 KSRGPLICKLRKEQEISLRCIAKKGIAKE 167



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 269 KKDGPKICPLVEEKSCKAGCVCKEGYLKD 355
           K  GP IC L +E+     C+ K+G  K+
Sbjct: 139 KSRGPLICKLRKEQEISLRCIAKKGIAKE 167


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +2

Query: 242 STVQPMTCSKKDGPKICPLVEEK 310
           ST Q + CS+  GPKI  ++EEK
Sbjct: 136 STPQRLICSRDGGPKINKVLEEK 158


>SPBC21.07c |ppk24||serine/threonine protein kinase
           Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 461

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +2

Query: 326 CVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQC 448
           CV         +G C+ +E CP  DL  + E  V  ++ +C
Sbjct: 194 CVTLTSVFNKSAGFCLVQEYCPQGDLFKQIEEKVLTLEDKC 234



 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +3

Query: 129 CVCKEGYLKDDSGKCVARENCPNSDLCSENE 221
           CV         +G C+ +E CP  DL  + E
Sbjct: 194 CVTLTSVFNKSAGFCLVQEYCPQGDLFKQIE 224


>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 303

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -1

Query: 546 QISLFTHASGFAGFSSTNGQILGPSFFEHVIGLHCAWTQFTY 421
           +I +F      AGF    G+ +G   F  +  + C W+++ Y
Sbjct: 260 EIGVFEKGMDAAGFERQMGEEIGEEDFGSLYPVTCRWSRWKY 301


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/53 (28%), Positives = 26/53 (49%)
 Frame = -3

Query: 427  HIYFIFRAEVRIWAVFSGDTFTAIVFQISLFTHASGFAGLFLHQWADLRTVLL 269
            + Y+   + +R+   F      +  F  + F+HA   AGL LHQW  +  V++
Sbjct: 876  YCYYAIASFMRLGQAFFCVPGLSKQFLTAFFSHA---AGLSLHQWTSMVNVVI 925


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
 Frame = -3

Query: 232 FTYISFSEQRSEFGQFSRATHLPLSSFRYPSLHTHPALQDFSS-------TNGQILGPSF 74
           FT ++F++ RS     S  +    S     +  +  ++ DFSS       TNG    P+ 
Sbjct: 14  FTILAFAQARSHSSSSSSTSKSSASHHSSINSTSATSVYDFSSLTTPIVPTNGVAQEPTL 73

Query: 73  FEHVIGLHCAWTQFTYIS 20
           +E   GL C   Q   IS
Sbjct: 74  YESSRGLSCPGYQARNIS 91


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -1

Query: 273 FFEHVIGCTVLGHISRIFHFQSRGQNLGSFLGR 175
           +F  + G  VL  I  IF F   G  + + LGR
Sbjct: 288 YFRDIEGQDVLLFIDNIFRFTQAGSEVSALLGR 320



 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 649 GRNVLGHISRIFHFQSRGQNLGSFLGR 569
           G++VL  I  IF F   G  + + LGR
Sbjct: 294 GQDVLLFIDNIFRFTQAGSEVSALLGR 320


>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -2

Query: 368 IYRYRLSDIPLYTRIRLCRTFPPPMGRS*DRPSLSTSLAALCLDTFHVY 222
           ++ ++LSD+ L   + +C T P   G S     L+T +  + L +F +Y
Sbjct: 321 LHIWQLSDVKLIATVHVCVTLPDDKGES--YTKLTTDIRNV-LQSFGIY 366


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 584 QFSRATHLPLSSFRYPSLHTHPALQAFPPPMGRS*DRPSLSTSL 453
           +FSRA  L  +   +PS+H  P    FPPP      +P  S++L
Sbjct: 175 EFSRAYDLHNA---HPSIHDAPYSSPFPPPRIVLGSKPVSSSTL 215


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 589 NSDLCSENEIYVKCVQAHC 645
           N D CS  +IY+ C   +C
Sbjct: 457 NQDNCSAGDIYILCFSENC 475


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = -3

Query: 265  ARHWLHCAWTHFTYISFSEQRSEFGQFSRATHLPLSSFRYPSLHTHPALQD 113
            +++ L C   HFT   F EQ    G    A  +  SS  Y S+  H AL D
Sbjct: 880  SKNCLECIQKHFTTKEFDEQFLNSGPLDAAV-IYDSSNCYLSIVWHHALYD 929


>SPAC1002.19 |urg1||GTP cyclohydrolase II |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 439

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 542 YPSLHTHPALQAFPPPMG 489
           YP L T P ++ F PP+G
Sbjct: 228 YPELITRPDIKVFLPPIG 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,061,126
Number of Sequences: 5004
Number of extensions: 70704
Number of successful extensions: 252
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)