Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10576
         (666 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0722 + 20946201-20947327,20949531-20950791                       29   2.5  
09_01_0008 - 233137-233279,233712-233827,235376-235720,236218-23...    29   3.3  
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087...    29   4.4  
10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799     28   7.7  

>07_03_0722 + 20946201-20947327,20949531-20950791
          Length = 795

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -2

Query: 263 TSLAALCLD---TFHVYFIFRAEVRIWAVFSGDTFTAIVFQISLFT-HASGFAG-LFLHQ 99
           T +A LC D   + H + +   E     V   + +++   +  L+T H SG+   +FL  
Sbjct: 157 TRIACLCFDPAISSHFHVLEYVEAEYEDVTGVEIYSS---ETGLWTLHVSGWGDDVFLRH 213

Query: 98  WADPRTVLL*ARNWAALC 45
           WA+PR+V L     +A C
Sbjct: 214 WANPRSVFLNGFLHSATC 231



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
 Frame = -2

Query: 263 TSLAALCLD---TFHVYFIFRAEVRIWAVFSGDTFTAIVFQISLFT-HASGFAG-LFLHQ 99
           T +A LC D   + H + +   E     V   + +++   +  L+T H SG+   +FL  
Sbjct: 575 TRIACLCFDPAISSHFHVLEYVEAEYEDVTGVEIYSS---ETGLWTLHVSGWGDDVFLRH 631

Query: 98  WADPRTVLL*ARNWAALC 45
           WA+PR+V L     +A C
Sbjct: 632 WANPRSVFLNGFLHSATC 649


>09_01_0008 -
           233137-233279,233712-233827,235376-235720,236218-236292,
           236508-236636,237516-237589,237836-237968,239366-239584,
           239671-239756,239843-241107,241304-241640,242548-242862,
           243614-243697,243776-243883,243981-244079
          Length = 1175

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 245 TVQPMTCSKKDGPKICPLVEEKSCKAGC 328
           TV P+    K G +  PL E+K C+ GC
Sbjct: 573 TVWPVDVRTKTGKRNHPLEEQKECQTGC 600



 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 57  PITCSKKDGPRICPLVEEKSCKAGC 131
           P+    K G R  PL E+K C+ GC
Sbjct: 576 PVDVRTKTGKRNHPLEEQKECQTGC 600


>04_04_1229 -
           31906854-31907300,31907986-31908181,31908631-31908756,
           31909962-31910329,31910680-31910835,31910968-31911168,
           31911230-31911375,31911439-31911865,31912527-31912627,
           31913197-31913254
          Length = 741

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 467 LSTSLGCTVLGHSSHIFHFQSRGQNLGSFLGRHIYRYRL 351
           LS +LGC +   S H++     G+ +G FL       RL
Sbjct: 194 LSMALGCNISLTSLHLYEVHISGEEIGQFLSNSFALERL 232


>10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799
          Length = 293

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -2

Query: 533 LHTHPALQAFPPPMGRS*DRPSLSTSLGCTVLGHSSHIFH 414
           L  H   Q+ P   GR+ + P+LS+S   TV G  SH  H
Sbjct: 224 LGNHRRCQSSPIRGGRAQEMPTLSSSTPSTVGGLGSHCRH 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,615,700
Number of Sequences: 37544
Number of extensions: 476209
Number of successful extensions: 1448
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1448
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)