Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10576
(666 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 35 0.068
SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0) 34 0.12
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.16
SB_34906| Best HMM Match : Cadherin (HMM E-Value=0) 33 0.21
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.28
SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45) 33 0.28
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.37
SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08) 32 0.48
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34) 31 0.64
SB_20348| Best HMM Match : Planc_extracel (HMM E-Value=5.4) 31 0.64
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_8064| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.84
SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09) 31 1.1
SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1) 31 1.1
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 30 1.5
SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_41690| Best HMM Match : DSL (HMM E-Value=0) 29 2.6
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_786| Best HMM Match : EGF (HMM E-Value=0) 29 2.6
SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0) 29 2.6
SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35) 29 2.6
SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_19255| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9) 29 3.4
SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011) 29 3.4
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 4.5
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098) 29 4.5
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86) 29 4.5
SB_9151| Best HMM Match : WAP (HMM E-Value=0.045) 29 4.5
SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_2169| Best HMM Match : EGF_CA (HMM E-Value=6.4e-33) 28 5.9
SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08) 28 5.9
SB_49391| Best HMM Match : Gal_Lectin (HMM E-Value=2.6e-05) 28 5.9
SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12) 28 5.9
SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0) 28 7.9
SB_46583| Best HMM Match : Hus1 (HMM E-Value=0) 28 7.9
SB_32828| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_8771| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = +2
Query: 305 EKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQCSPMTCSKK 472
E+ C +GC C +G + D+G CV C C N Y + SP CS+K
Sbjct: 1245 ERPCVSGCYCPDGLIMHDNGTCVQSMQCQ----CKHNNKYYDA--GAISPTDCSRK 1294
Score = 34.3 bits (75), Expect = 0.090
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 254 PMTCSKKDGPKICPLVEEKSCKAGCVC-KEGYLKDDSGKCVARENCP 391
P TC D + + C GC C KEG L ++ KCV + CP
Sbjct: 1138 PSTCD--DLANVTDTCPSRRCVEGCYCEKEGELMNNEHKCVDKTQCP 1182
Score = 33.9 bits (74), Expect = 0.12
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +3
Query: 57 PITCSKKDGPRICPLVEEKSCKAGCVC-KEGYLKDDSGKCVARENCP 194
P TC D + + C GC C KEG L ++ KCV + CP
Sbjct: 1138 PSTCD--DLANVTDTCPSRRCVEGCYCEKEGELMNNEHKCVDKTQCP 1182
Score = 33.9 bits (74), Expect = 0.12
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +3
Query: 108 EKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIY 227
E+ C +GC C +G + D+G CV C C N Y
Sbjct: 1245 ERPCVSGCYCPDGLIMHDNGTCVQSMQCQ----CKHNNKY 1280
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +2
Query: 236 CPSTVQPMTCSKKDGPKIC------PLVEEKSCKAGCVCKEGYLKDDSGKCVARENC 388
CPS ++ CS P+ C P C GC C EG ++ D GKCV C
Sbjct: 756 CPSGMEHSECSSAC-PRDCSNMNSDPNACNSKCVDGCFCPEGKIQ-DRGKCVDPGQC 810
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Frame = +3
Query: 45 AQCS---PITCSKKDG-PRICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENC 191
++CS P CS + P C C GC C EG ++ D GKCV C
Sbjct: 763 SECSSACPRDCSNMNSDPNAC----NSKCVDGCFCPEGKIQ-DRGKCVDPGQC 810
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 34.7 bits (76), Expect = 0.068
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Frame = +3
Query: 9 CSENEIYVNCVQAQCSPITCSKKDGP-RICPLVEEKSCKAGCVCKEGYLK--DDSGK--C 173
C EN ++ C A C P TC G + C + C GC CKE +++ + GK C
Sbjct: 180 CPENAVFKYCTSA-C-PETCHDPPGRNKTCSM----RCVEGCECKEEFVQRVNAVGKVQC 233
Query: 174 VARENCP 194
+ R+ CP
Sbjct: 234 IKRKECP 240
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Frame = +2
Query: 254 PMTCSKKDGP-KICPLVEEKSCKAGCVCKEGYLK--DDSGK--CVARENCP 391
P TC G K C + C GC CKE +++ + GK C+ R+ CP
Sbjct: 194 PETCHDPPGRNKTCSM----RCVEGCECKEEFVQRVNAVGKVQCIKRKECP 240
>SB_4999| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 1054
Score = 33.9 bits (74), Expect = 0.12
Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = +2
Query: 332 CKEGYLKDDSGKCVARENCPNSD-LCSENEIYVNCVQAQCSPMTCSKKDG--PKICPLVE 502
CK GY +DS CV C + +CS N C S CS K G PK V
Sbjct: 34 CKRGYAYNDSNVCVDVNECTETPYVCSGNNSI--CENTDGS-FNCSCKSGYTPKFSEAVG 90
Query: 503 EKPAKPDAC 529
+ PA +C
Sbjct: 91 DAPANLTSC 99
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 33.5 bits (73), Expect = 0.16
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +2
Query: 317 KAGCVCKEGYLKDDSGKCVARENCPNSD-LCSENEIYVNCVQAQ-CSPMTCSKKDGPKIC 490
K CVCK GY D G+C + C SD LC N + N + C + + DG K C
Sbjct: 604 KFTCVCKNGYQIVD-GECKDKNECVGSDLLCDPNALCTNTPGSYLCRCKSGFQGDG-KTC 661
Query: 491 PLVEE 505
++E
Sbjct: 662 ADIDE 666
Score = 31.5 bits (68), Expect = 0.64
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 326 CVCKEGYLKDDSGKCVARENCPNSDL-CSENEIYVN 430
C C EGY +D GKC C CS N + N
Sbjct: 484 CQCAEGYERDSQGKCADVNECKTGKHDCSVNALCTN 519
Score = 31.1 bits (67), Expect = 0.84
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 120 KAGCVCKEGYLKDDSGKCVARENCPNSD-LCSENEI 224
K CVCK GY D G+C + C SD LC N +
Sbjct: 604 KFTCVCKNGYQIVD-GECKDKNECVGSDLLCDPNAL 638
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 129 CVCKEGYLKDDSGKCVARENCPNSDL-CSENEI 224
C C EGY +D GKC C CS N +
Sbjct: 484 CQCAEGYERDSQGKCADVNECKTGKHDCSVNAL 516
>SB_34906| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 3922
Score = 33.1 bits (72), Expect = 0.21
Identities = 24/90 (26%), Positives = 38/90 (42%)
Frame = +2
Query: 230 EMCPSTVQPMTCSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCS 409
E C +T + S +D P + V ++ + GC C EG+ ++ G CV + P LCS
Sbjct: 3543 EGCTATNRFQGVSLEDSPDV--EVRRQNVRKGCPCAEGFC-ENGGTCV--DGTPPYCLCS 3597
Query: 410 ENEIYVNCVQAQCSPMTCSKKDGPKICPLV 499
CV +P + + P V
Sbjct: 3598 PGWTGPTCVLIVTAPNPGQRPGSRVVSPFV 3627
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Frame = +2
Query: 275 DGPKIC-PLVEEKSCKAGCVCKEGYLKDDSGKCVARE-NCPNSDLCSENEIYVNCVQAQC 448
DG C +E CK C + D G+C+ C C++ CV C
Sbjct: 363 DGENDCGDRSDESGCKPTTTCSANEFRCDDGRCITSTFRCDREFDCTDRSDERGCVNKTC 422
Query: 449 SP--MTCS 466
+P TC+
Sbjct: 423 APYEFTCA 430
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 2/70 (2%)
Frame = +3
Query: 36 CVQAQCSPITCSKKDGPRIC-PLVEEKSCKAGCVCKEGYLKDDSGKCVARE-NCPNSDLC 209
C +QC P + DG C +E CK C + D G+C+ C C
Sbjct: 350 CANSQCVP-NSFRCDGENDCGDRSDESGCKPTTTCSANEFRCDDGRCITSTFRCDREFDC 408
Query: 210 SENEIYVKCV 239
++ CV
Sbjct: 409 TDRSDERGCV 418
>SB_27746| Best HMM Match : MAM (HMM E-Value=1.4013e-45)
Length = 622
Score = 32.7 bits (71), Expect = 0.28
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = +2
Query: 275 DGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVAREN-CPNSDLCSENEIYVNCVQAQCS 451
DG K C + S + C C SG+C+ C N + CS+N NC A CS
Sbjct: 203 DGDKACL---DGSDEKHCSCPSNMFLCPSGECIPTTALCNNENDCSDNADERNCQYANCS 259
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Frame = +2
Query: 302 EEKSCKAGCVCKEGYLKDDSGKCVARE-NCPNSDLCSENEIYVNCVQAQCSP--MTCSKK 472
E SC A C E + +G CV + C D C + +NC C P TC+ K
Sbjct: 658 ERNSC-ATMTCSENEITCGNGICVVKRWVCDQDDDCGDGTDELNCAPHTCRPNEFTCADK 716
Score = 31.9 bits (69), Expect = 0.48
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = +2
Query: 365 KCVARE-NCPNSDLCSENEIYVNCVQAQCSPMT 460
KC+A C D C +N +NC +A C+P T
Sbjct: 598 KCIAATWKCDGEDDCGDNSDEINCPKATCNPDT 630
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/76 (27%), Positives = 31/76 (40%)
Frame = +3
Query: 3 DLCSENEIYVNCVQAQCSPITCSKKDGPRICPLVEEKSCKAGCVCKEGYLKDDSGKCVAR 182
D C +N +NC +A C+P T + R P C C +G D+ C A
Sbjct: 610 DDCGDNSDEINCPKATCNPDTQFRCTNGRCIP--RRWVCDKDDDCHDG--SDERNSC-AT 664
Query: 183 ENCPNSDLCSENEIYV 230
C +++ N I V
Sbjct: 665 MTCSENEITCGNGICV 680
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 562 KCVARE-NCPNSDLCSENEIYVKCVQAHCGP 651
KC+A C D C +N + C +A C P
Sbjct: 598 KCIAATWKCDGEDDCGDNSDEINCPKATCNP 628
>SB_47465| Best HMM Match : EGF_CA (HMM E-Value=2.4e-08)
Length = 263
Score = 31.9 bits (69), Expect = 0.48
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 6/82 (7%)
Frame = +2
Query: 290 CPLVEEKSCKAG---CVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQCSPM- 457
CP + +G C CK+G++++ G CV + C +CSE + C+ S +
Sbjct: 123 CPRYSQSRNVSGSIICECKKGFVREPEG-CVDIDECVYPRVCSE---HAKCINTHGSYLC 178
Query: 458 TCSKK--DGPKICPLVEEKPAK 517
TC + GP C L + ++
Sbjct: 179 TCVEPYVSGPGGCVLSSDSSSR 200
Score = 31.1 bits (67), Expect = 0.84
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +3
Query: 3 DLCSENEIYVNCVQAQCSPITCSKKDGPRICPLVEEKSCKAG---CVCKEGYLKDDSGKC 173
++C+ EI CS+ CP + +G C CK+G++++ G C
Sbjct: 98 NICARGEIVNTFCAYIAGECRCSEN-----CPRYSQSRNVSGSIICECKKGFVREPEG-C 151
Query: 174 VARENCPNSDLCSENEIYVKCV 239
V + C +CSE + KC+
Sbjct: 152 VDIDECVYPRVCSE---HAKCI 170
>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5222
Score = 31.9 bits (69), Expect = 0.48
Identities = 17/63 (26%), Positives = 25/63 (39%)
Frame = +2
Query: 302 EEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQCSPMTCSKKDGP 481
+ + C G C+ YL +SG CVA C S + E N + + GP
Sbjct: 1245 QPRPCTPGYYCESDYLSTESGLCVAGYYCNGSTVFPRPENQTNGDRCPKGHFCPTGSSGP 1304
Query: 482 KIC 490
+ C
Sbjct: 1305 QPC 1307
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 105 EEKSCKAGCVCKEGYLKDDSGKCVARENCPNS 200
+ + C G C+ YL +SG CVA C S
Sbjct: 1245 QPRPCTPGYYCESDYLSTESGLCVAGYYCNGS 1276
>SB_47789| Best HMM Match : Ldl_recept_a (HMM E-Value=4.2e-34)
Length = 262
Score = 31.5 bits (68), Expect = 0.64
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 332 CKEGYLKDDSGKCVARE-NCPNSDLCSENEIYVNCVQAQCSP 454
C G K +GKC+ C + + C +N NC + C+P
Sbjct: 188 CAPGQFKCGNGKCIPSSWKCDHDNDCGDNSDENNCPYSTCNP 229
>SB_20348| Best HMM Match : Planc_extracel (HMM E-Value=5.4)
Length = 148
Score = 31.5 bits (68), Expect = 0.64
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -2
Query: 242 LDTFHVYFIFRAEVRIWAVFSGDTFTAIVFQISLFTHASGFAGLFLHQWA 93
LDTF + + + +IW+ + T ++F +L+ +GF GL + WA
Sbjct: 38 LDTFENFVKTKTQGQIWSASAAIAITLVIFLTALY--YAGFFGLCVSAWA 85
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 439 LDTVHIYFIFRAEVRIWAVFSGDTFTAIVFQISLFTHASGFAGLFLHQWA 290
LDT + + + +IW+ + T ++F +L+ +GF GL + WA
Sbjct: 38 LDTFENFVKTKTQGQIWSASAAIAITLVIFLTALY--YAGFFGLCVSAWA 85
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 31.1 bits (67), Expect = 0.84
Identities = 28/97 (28%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Frame = +2
Query: 260 TCSKKDGPKICPLV---EEKSCKAGCV---CKEGYLKDDSGKCVARENCPNSDLCSENEI 421
+C K GP CP+ + C A C CK G + + V+ N LC E
Sbjct: 1723 SCPKVCGPG-CPVQCCSDLNICPANCTGSACKPGCITIEDSVTVS---LGNDKLCPE-AC 1777
Query: 422 YVNCVQAQCSPMTCSKKDGPKICPLVEEKPAKPDACV 532
C+ + C C K P +CP E PD V
Sbjct: 1778 LTKCLPS-CPSTCCIKNSPPVVCPKSCETTCTPDCPV 1813
Score = 30.3 bits (65), Expect = 1.5
Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 14/114 (12%)
Frame = +2
Query: 236 CPSTVQPMTCSKKDGPKIC------PLVEEKSCKAGCV--CKEGYLKDDSGKCVARE--N 385
CP+ P C K D P C PL E + A C C E + KC
Sbjct: 1458 CPAGCLPSNC-KPDCPSKCCLTILEPLQEGPNATAYCPSDCFESCKPNCPIKCCPATAIK 1516
Query: 386 CPNSDLCSENEIYVNCVQAQCS----PMTCSKKDGPKICPLVEEKPAKPDACVK 535
CP CSE+ C C P T + +CP+ KPD +K
Sbjct: 1517 CPVG--CSEHSCKPECPSKCCMKVLPPTTLGQNTANSLCPVYCLTSCKPDCPIK 1568
>SB_8064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 137
Score = 31.1 bits (67), Expect = 0.84
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 317 CRTFPPPMGRS*DRPSLSTSLAALCLDTFHVYFIFRAEVRIWAVFSGDTFTAI 159
C T +G RP S+S+++LC+ + E +IWA F FT I
Sbjct: 47 CGTNRRHLGNEISRPLPSSSISSLCVAFPASIWTDSKETKIWATFGSPRFTRI 99
>SB_55591| Best HMM Match : TIL (HMM E-Value=4.2e-09)
Length = 133
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 6/57 (10%)
Frame = +2
Query: 236 CPSTVQPMTCSKKDGPKIC------PLVEEKSCKAGCVCKEGYLKDDSGKCVARENC 388
CPS ++ C+ P+ C P C GC C EG ++ D GKCV C
Sbjct: 57 CPSGMEHSECNSAC-PRDCSNMNSDPNACNSKCVDGCFCPEGKIQ-DRGKCVDPGQC 111
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = +3
Query: 57 PITCSKKDG-PRICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENC 191
P CS + P C C GC C EG ++ D GKCV C
Sbjct: 71 PRDCSNMNSDPNAC----NSKCVDGCFCPEGKIQ-DRGKCVDPGQC 111
>SB_24750| Best HMM Match : Rad10 (HMM E-Value=5.1)
Length = 576
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Frame = -2
Query: 647 PQCAWTHFTYISFSEQRSEFGQFSRATHLPLSSFRYPSL---HTHPALQAFP 501
P WT FT +S S+ S +RA + LS YP + H +P L P
Sbjct: 355 PDLLWTFFTSLSLSDLLSRGSTLTRADYARLSRAGYPPITDRHGNPPLVIDP 406
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = -3
Query: 241 WTHFTYISFSEQRSEFGQFSRATHLPLSSFRYPSL---HTHPAL 119
WT FT +S S+ S +RA + LS YP + H +P L
Sbjct: 359 WTFFTSLSLSDLLSRGSTLTRADYARLSRAGYPPITDRHGNPPL 402
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +3
Query: 81 GPRICPLVEEKSCKAGCVCKEGYLKD-DSGKC 173
GPR+CP + ++ C C EGY D D C
Sbjct: 9 GPRMCPDLYQQRGSYKCACSEGYTLDTDKMNC 40
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = +2
Query: 278 GPKICPLVEEKSCKAGCVCKEGYLKD-DSGKC 370
GP++CP + ++ C C EGY D D C
Sbjct: 9 GPRMCPDLYQQRGSYKCACSEGYTLDTDKMNC 40
>SB_48384| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1678
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +3
Query: 129 CVCKEGYLKDDSGKCVARENCPNSD-LCSEN 218
C CK GY +DS CV C + +CS N
Sbjct: 811 CSCKRGYAHNDSNVCVDVNECTETPYVCSGN 841
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Frame = +2
Query: 326 CVCKEGYLKDDSGKCVARENCPNSD-LCSEN 415
C CK GY +DS CV C + +CS N
Sbjct: 811 CSCKRGYAHNDSNVCVDVNECTETPYVCSGN 841
>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2101
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Frame = +2
Query: 227 REMCPSTVQPMTCSKKDG----PKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPN 394
R C + M C + G P CP+V+E + +C + D++ KC + CP
Sbjct: 818 RRKCCFSGCAMECMETPGSIPRPGQCPMVDETDPE---MCPD----DEADKCQIDDQCPG 870
Query: 395 SDLCSENEIYVNCV 436
+D C + C+
Sbjct: 871 NDKCCFTACIMECI 884
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +3
Query: 84 PRICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVKCV 239
P CP+V+E + +C + D++ KC + CP +D C ++C+
Sbjct: 840 PGQCPMVDETDPE---MCPD----DEADKCQIDDQCPGNDKCCFTACIMECI 884
>SB_41690| Best HMM Match : DSL (HMM E-Value=0)
Length = 2798
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/71 (33%), Positives = 26/71 (36%)
Frame = +2
Query: 263 CSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQA 442
C G KIC L CKE KDD+ EN +C N VNC Q
Sbjct: 2241 CENSTGEKIC-LPNWYGVNCSKYCKE---KDDNSGHYRCENSTGEKICLPNWYGVNCSQ- 2295
Query: 443 QCSPMTCSKKD 475
C KKD
Sbjct: 2296 -----HCKKKD 2301
Score = 28.3 bits (60), Expect = 5.9
Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 6/82 (7%)
Frame = +2
Query: 263 CSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQ- 439
C G KIC L CKE KDD+ EN +C N VNC +
Sbjct: 2207 CDNSTGEKIC-LPNWYGVNCSKYCKE---KDDNSGNYRCENSTGEKICLPNWYGVNCSKY 2262
Query: 440 -----AQCSPMTCSKKDGPKIC 490
C G KIC
Sbjct: 2263 CKEKDDNSGHYRCENSTGEKIC 2284
>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +2
Query: 359 SGKCVARENCPNSDLCSENEIYVNCVQAQCSPMTCSKKDGPKICPLVEEKPAK-PD 523
+ KC R++ P++ C E Y N +P CS K+ IC ++ ++ PD
Sbjct: 68 TAKC--RKHEPSAKSCEEANKYFNNPNYDPTPRRCSTKNNEDICQVISNSSSESPD 121
>SB_786| Best HMM Match : EGF (HMM E-Value=0)
Length = 1427
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +1
Query: 556 SGKCVARENCPNSDLCSENEIYVKCVQAHCGPRPC 660
+G+CVA E +C + C + +C P PC
Sbjct: 245 NGRCVADEKAGYKCVCHSGFVGKNCDENYCVPNPC 279
>SB_17530| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 165
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Frame = +2
Query: 326 CVCKEGYLKDDSGKCVARENCPNSDL-CSENEIYVN 430
C C EGY ++ GKC C CS N + N
Sbjct: 27 CQCAEGYERNSQGKCADVNECKTGKHDCSVNALCTN 62
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Frame = +3
Query: 129 CVCKEGYLKDDSGKCVARENCPNSDL-CSENEI 224
C C EGY ++ GKC C CS N +
Sbjct: 27 CQCAEGYERNSQGKCADVNECKTGKHDCSVNAL 59
>SB_10156| Best HMM Match : DSL (HMM E-Value=3.3e-35)
Length = 681
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/71 (33%), Positives = 26/71 (36%)
Frame = +2
Query: 263 CSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQA 442
C G KIC L CKE KDD+ EN +C N VNC Q
Sbjct: 232 CENSTGEKIC-LPNWYGTNCSKYCKE---KDDNSGNYRCENSTGEKICLPNWYGVNCSQ- 286
Query: 443 QCSPMTCSKKD 475
C KKD
Sbjct: 287 -----HCKKKD 292
>SB_26085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 484
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = +2
Query: 326 CVCKEGYLKDD-SGKCVARENCPNSDLCSENEIYVNCVQAQCS 451
C C+ GYL DD C+ + C C NCV Q S
Sbjct: 309 CECESGYLMDDLKAHCIDVDECALGATCPSG---TNCVNTQGS 348
>SB_19255| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 462
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Frame = +1
Query: 46 HSAAQLRAQRRTVLGSAHWWRKSPAKPDACVKRDI*KTI--AVNVSPEKTAQILTS-ALK 216
+S L++ ++ +A +WR+ + K+DI + I A+ + EK ++ TS + K
Sbjct: 317 NSVGALKSLSAIMMNAATFWRQMQLHCETLAKQDIQRLIEKAITLPEEKRIKVWTSTSFK 376
Query: 217 MKYT*NVSKHSAANDV 264
K SK A +DV
Sbjct: 377 TKAVQYYSKWVALDDV 392
>SB_55061| Best HMM Match : Defensin_beta (HMM E-Value=6.9)
Length = 350
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Frame = +2
Query: 380 ENC-PNSDLCSENEIYVNCVQAQCSPMTCSKKDGPKIC-PLVEEKPAKPDAC 529
++C PN D C+ N Y N C+P S P C P + PD+C
Sbjct: 216 DSCYPNPDYCNPNPDYCNPNPDSCNPNPDSCYPNPDYCYPNPDYCYPNPDSC 267
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +2
Query: 380 ENC-PNSDLCSENEIYVNCVQAQCSPMTCSKKDGPKIC-PLVEEKPAKPDAC 529
++C PN D C+ N Y N C+P S P C P + PD C
Sbjct: 104 DSCYPNPDYCNPNPDYCNPNPDYCNPNPDSCNPNPDSCYPNPDYCNPNPDYC 155
>SB_29682| Best HMM Match : PKD_channel (HMM E-Value=0.0011)
Length = 318
Score = 29.1 bits (62), Expect = 3.4
Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Frame = -1
Query: 474 SFFEHVIGLHCAWTQFTYISFSEQRSEFGQF----SRATHLPLSSFRYPSLHTHPALQDF 307
SFF + ++ A+ QF +ISF +G F S + L F + L
Sbjct: 106 SFFVMFLIVYLAYVQFAFISFGSTDQNYGSFASCMSTMLSMTLGGFDFEGL--------- 156
Query: 306 SSTNGQILGPSFF 268
N ++LGP FF
Sbjct: 157 -ENNNRLLGPIFF 168
>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3474
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 129 CVCKEGYLKDDSGKCVARENCPNSDLCSENE 221
C C EGY G+CV C S+ SE++
Sbjct: 295 CTCFEGYHLTSDGQCVDINECSCSNQTSEDD 325
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 326 CVCKEGYLKDDSGKCVARENCPNSDLCSENE 418
C C EGY G+CV C S+ SE++
Sbjct: 295 CTCFEGYHLTSDGQCVDINECSCSNQTSEDD 325
>SB_48437| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4247
Score = 28.7 bits (61), Expect = 4.5
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
Frame = -1
Query: 414 FSEQRSEFGQFSRATHLPLSSFRYPSLHTHP-ALQDFSSTNGQILGPSFFEHVIG--CTV 244
+SE + E Q HL S +LHT LQ + +N + G FE ++ C V
Sbjct: 1022 WSEVQQEQQQRRHPQHLHQQSLGDATLHTRTWKLQPEARSN--MTGEQVFEILLPKQCHV 1079
Query: 243 LGHISRIFHFQSRGQNLGSFLGRHIY 166
GH+ F FQS + S G +Y
Sbjct: 1080 -GHVDIKFSFQSSSSSSSSCNGMQVY 1104
>SB_42106| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 929
Score = 28.7 bits (61), Expect = 4.5
Identities = 26/88 (29%), Positives = 39/88 (44%)
Frame = -2
Query: 635 WTHFTYISFSEQRSEFGQFSRATHLPLSSFRYPSLHTHPALQAFPPPMGRS*DRPSLSTS 456
W Y+ +S++ F + HLP ++ +LH P FPPP R+ +TS
Sbjct: 707 WVKTYYVRYSDKGYSFKYYKENGHLP---WKLRTLH--PPYTQFPPPARRA------ATS 755
Query: 455 LGCTVLGHSSHIFHFQSRGQNLGSFLGR 372
G T + SHI RG+ G G+
Sbjct: 756 -GYTPVTWRSHI---SRRGEFYGCVTGK 779
>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1937
Score = 28.7 bits (61), Expect = 4.5
Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Frame = +2
Query: 326 CVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQCS--PMTCSKKDG 478
CVC GYL D KC A C C N C+ A S TC+ DG
Sbjct: 1224 CVCNPGYL-GDGRKCTADGTCEGVK-CDPN---AKCIAASPSGENRTCACNDG 1271
>SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098)
Length = 533
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -1
Query: 387 QFSRATHLPLSSFR-YPSLHTHPALQDFS 304
+FSR + LP+ F P LH H ++QD S
Sbjct: 59 EFSRVSKLPIFQFTGSPILHLHESMQDIS 87
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = -3
Query: 190 QFSRATHLPLSSFR-YPSLHTHPALQDFS 107
+FSR + LP+ F P LH H ++QD S
Sbjct: 59 EFSRVSKLPIFQFTGSPILHLHESMQDIS 87
>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
Length = 1182
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +2
Query: 293 PLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQ 445
P VE + + G VC E +C +R +C ++ N I C Q Q
Sbjct: 263 PEVERPADELGVVCDEDVASSVETRCGSRVSCYSAKYRIINRIIAGCKQGQ 313
>SB_9151| Best HMM Match : WAP (HMM E-Value=0.045)
Length = 1865
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/48 (29%), Positives = 20/48 (41%)
Frame = +2
Query: 335 KEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQAQCSPMTCSKKDG 478
++G DD KC A + C LC+ + N C+ C K G
Sbjct: 181 RDGVPCDDGNKCTAADTCTRG-LCTSKPLTCNERCQFCNGYACGNKPG 227
>SB_33921| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = +2
Query: 242 STVQPMTCSKKDGP-KICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENE 418
S +P CS+ + I + +C C+C E G C + C + +E
Sbjct: 265 SLERPTHCSEGNRTYTIGEIFVTDNCSERCLCTEEGRLACIGLCPPPQTCSPQERKTERM 324
Query: 419 IYVNCVQAQCSPMTC 463
+ V + QC +TC
Sbjct: 325 VLVPGSECQCREITC 339
>SB_8159| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 767
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 239 PSTVQPMTCSKKDGPKICPLVEEKSCK 319
P +VQP +C+K+D PK V C+
Sbjct: 283 PDSVQPASCAKQDSPKTVIPVTVDECQ 309
>SB_5361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1562
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +2
Query: 359 SGKCVARENCPNSDLCSENEIYVNCVQAQCSPMTCSKKDGPKICPLV 499
+ KC R++ P++ C E Y N P CS K+ IC ++
Sbjct: 804 TAKC--RKHEPSAKSCEEANKYFNSPNYDPPPRRCSTKNNEDICQVI 848
>SB_2169| Best HMM Match : EGF_CA (HMM E-Value=6.4e-33)
Length = 133
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Frame = +2
Query: 314 CKAGCV-CKEGYLKDDSGKCVARENC-------PNSDLCSENEIYVNCVQAQCSP 454
C+A + C GY + +G+CV + C P+ C E +C+ CSP
Sbjct: 27 CQASAIKCSRGY-EPQNGRCVDVDECSSGLARCPSGQSCVNTEGSYSCLPIGCSP 80
>SB_55808| Best HMM Match : Pentaxin (HMM E-Value=1.2e-08)
Length = 574
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -3
Query: 610 FQSRGQNLGSFLGRHIYRYRLSDIPLYTRIRL 515
F++R Q G+ LG H+Y Y D P TRI L
Sbjct: 79 FRTRPQ-AGNVLGGHLYFYHTGDHPDQTRIAL 109
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -2
Query: 413 FQSRGQNLGSFLGRHIYRYRLSDIPLYTRIRL 318
F++R Q G+ LG H+Y Y D P TRI L
Sbjct: 79 FRTRPQ-AGNVLGGHLYFYHTGDHPDQTRIAL 109
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/32 (46%), Positives = 19/32 (59%)
Frame = -1
Query: 216 FQSRGQNLGSFLGRHIYRYRLSDIPLYTRIRL 121
F++R Q G+ LG H+Y Y D P TRI L
Sbjct: 79 FRTRPQ-AGNVLGGHLYFYHTGDHPDQTRIAL 109
>SB_49391| Best HMM Match : Gal_Lectin (HMM E-Value=2.6e-05)
Length = 390
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 299 VEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQ 439
+ + C AG VCK Y ++DS C+ + N +C ++C Q
Sbjct: 263 IAARPCPAGSVCKVDY-ENDSFSCIYAKK--NEMICEGKTAQLSCFQ 306
>SB_39539| Best HMM Match : VWA (HMM E-Value=1.8e-12)
Length = 515
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +2
Query: 362 GKCVARENCPNSDLCSENEIYVN-CVQAQCSPMTCSKKDGPKICPLVEEKPAKPDACVKR 538
G RE+CPN+D VN C++ C K GP P P KP V +
Sbjct: 236 GSYQVRESCPNTDGVQGGSYQVNECIRFNDVIFLC-KSQGP---PSPSAGPTKPPRSVNQ 291
Query: 539 DI*KTIAVNVSPE 577
T + P+
Sbjct: 292 SADATSSTPTMPQ 304
>SB_53569| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 921
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +3
Query: 129 CVCKEGY-LKDDSGKCVARENCPNSDLC 209
C C+ GY L D+ +C+ + C N + C
Sbjct: 296 CQCRAGYHLHSDNKQCIDDDECSNPNRC 323
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = +2
Query: 326 CVCKEGY-LKDDSGKCVARENCPNSDLC 406
C C+ GY L D+ +C+ + C N + C
Sbjct: 296 CQCRAGYHLHSDNKQCIDDDECSNPNRC 323
>SB_46583| Best HMM Match : Hus1 (HMM E-Value=0)
Length = 646
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/57 (29%), Positives = 22/57 (38%)
Frame = -1
Query: 624 HVYFIFRAEVRIWAVFSGDTFTAIVFQISLFTHASGFAGFSSTNGQILGPSFFEHVI 454
HV FIF + FS + + F + F H F G N G F HV+
Sbjct: 225 HVDFIFHNMTKSNLDFSDKNLSGLSFAHTTFAHNVSFEGAILFNTCFYGCEFASHVV 281
>SB_32828| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = -1
Query: 423 YISFSEQRSEFGQFSRATHLPLSSFRYPSLHTHPALQDFSSTNGQILGPSFFEHVIGCTV 244
++S ++ FG+F H P FRY + + +F+S ++ PS ++G
Sbjct: 16 HLSIENRKWTFGRFGGCVHTPCIPFRYRPVLPYDT-YNFASAQPILVVPSQVHALVGSEN 74
Query: 243 LGHI 232
G +
Sbjct: 75 KGQV 78
>SB_26778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1050
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 7/84 (8%)
Frame = +2
Query: 260 TCSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVNCVQ 439
TC++ DG KIC C++ + D SG + +C + VNC +
Sbjct: 387 TCNETDGAKICD-KHWYGTHCNVFCRD--MNDSSGHYFCNRT-SGAKICRNDWYGVNCTE 442
Query: 440 AQCSP-------MTCSKKDGPKIC 490
C+P +C G KIC
Sbjct: 443 -YCTPRNKVRGHYSCDMATGAKIC 465
>SB_8771| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 425 VNCVQAQCSPMTCSKKDGPKICPLVEEKP 511
VN V+ CS +K +I P EEKP
Sbjct: 105 VNYVEVNCSSWALHRKTNQRISPETEEKP 133
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +1
Query: 550 DDSGKCVARENCPNSDLCSENEIYVKCVQ 636
D + C +CPN+ +C ++ Y +CV+
Sbjct: 943 DRADSCQKDRDCPNNFMCCDSGCYKQCVK 971
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,473,236
Number of Sequences: 59808
Number of extensions: 576851
Number of successful extensions: 1939
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1929
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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