Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10576
(666 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g20720.1 68414.m02596 helicase-related similar to BRCA1-bindi... 29 3.7
At5g65400.1 68418.m08225 expressed protein contains Pfam profile... 28 4.9
At5g38140.1 68418.m04596 histone-like transcription factor (CBF/... 28 4.9
At5g27610.1 68418.m03308 myb family transcription factor contain... 28 4.9
At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to GB... 28 4.9
At3g13680.1 68416.m01727 F-box family protein contains F-box dom... 27 8.5
At2g43420.1 68415.m05396 3-beta hydroxysteroid dehydrogenase/iso... 27 8.5
At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,... 27 8.5
At1g02580.1 68414.m00209 maternal embryogenesis control protein ... 27 8.5
>At1g20720.1 68414.m02596 helicase-related similar to BRCA1-binding
helicase-like protein BACH1 (GI:13661819) Homo sapiens].;
Length = 1169
Score = 28.7 bits (61), Expect = 3.7
Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 5/111 (4%)
Frame = +2
Query: 227 REMCPSTVQPMTCSKKDGPKICPLVEEKSCKAGCVCKEGYLKDDSGKCVARE--NC---P 391
R++ P + + + EE C + E ++ D G C NC P
Sbjct: 848 RDVKPKIAEDLRSMGHSAQTFVQVKEEAECCREVIDLECGVQPDLGYCEVSSVTNCDEAP 907
Query: 392 NSDLCSENEIYVNCVQAQCSPMTCSKKDGPKICPLVEEKPAKPDACVKRDI 544
+ E +N + SP +CS + + P PD +K+ I
Sbjct: 908 ETSFVQETSGMINGISV-ASPCSCSMNESSSPATVGLRSPGSPDQLLKQHI 957
>At5g65400.1 68418.m08225 expressed protein contains Pfam profile:
PF03959 domain of unknown function (DUF341) contains
Pfam profile: PF03959 domain of unknown function
(DUF341)
Length = 252
Score = 28.3 bits (60), Expect = 4.9
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = -1
Query: 393 FGQFSRATHLPLSSFRYPSLHTHPALQDFSSTNGQILGPSFFEHVIGCTVLGHI 232
FG+ A + S R PSLH +DF G++L SF E V+ GHI
Sbjct: 166 FGEPKAAVNAFSSPVRCPSLH-FIGERDFLKIEGEVLVESFVEPVVIHHSGGHI 218
>At5g38140.1 68418.m04596 histone-like transcription factor
(CBF/NF-Y) family protein similar to CCAAT-binding
transcription factor subunit AAB-1 (GI:2583171)
[Neurospora crassa]; contains a CBF/NF-Y subunit
signature (PDOC00578) presernt in members of
histone-like transcription factor family; contains Pfam
PF00808 : Histone-like transcription factor (CBF/NF-Y)
and archaeal histone
Length = 195
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 617 ISFSEQRSEFGQFSRATHLPLSSFR 543
+ ++ QR + G F+ THLPLS R
Sbjct: 50 VFWNNQREQLGNFAGQTHLPLSRVR 74
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -1
Query: 420 ISFSEQRSEFGQFSRATHLPLSSFR 346
+ ++ QR + G F+ THLPLS R
Sbjct: 50 VFWNNQREQLGNFAGQTHLPLSRVR 74
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -3
Query: 223 ISFSEQRSEFGQFSRATHLPLSSFR 149
+ ++ QR + G F+ THLPLS R
Sbjct: 50 VFWNNQREQLGNFAGQTHLPLSRVR 74
>At5g27610.1 68418.m03308 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 969
Score = 28.3 bits (60), Expect = 4.9
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = -1
Query: 489 QILGPSFFEHVIGLHCAWTQFTYISFSEQRSEFGQFSRATHLPLSSFRYPSLHTHPALQD 310
Q+L F E V+ H + +SF +Q + + RAT F H ++D
Sbjct: 140 QVLPSDFREEVVPPHSVASVEGCLSFLKQTQAYEKRQRATGKRTPRFLVAITHERDDIED 199
Query: 309 FSSTN 295
FS N
Sbjct: 200 FSPPN 204
>At1g48150.1 68414.m05374 MADS-box protein (AGL74 ) similar to
GB:CAA73304 from [Arabidopsis thaliana] (Gene 215 (1),
11-17 (1998)); contains Pfam domain PF00319: SRF-type
transcription factor (DNA-binding and dimerisation
domain); PMID: 12837945
Length = 323
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/68 (27%), Positives = 35/68 (51%)
Frame = -2
Query: 278 RPSLSTSLAALCLDTFHVYFIFRAEVRIWAVFSGDTFTAIVFQISLFTHASGFAGLFLHQ 99
RP+L + A LCL + A + ++ V S D + +V+ S ++HAS +L+
Sbjct: 39 RPTLFSKAADLCL-------LSGANIAVF-VTSPDENSDVVYSFSGYSHASEIVDCYLNN 90
Query: 98 WADPRTVL 75
+ P+T +
Sbjct: 91 KSPPKTTI 98
>At3g13680.1 68416.m01727 F-box family protein contains F-box domain
Pfam:PF00646
Length = 395
Score = 27.5 bits (58), Expect = 8.5
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +2
Query: 428 NCVQAQCSPMTCSKKDGPKICPLVEEKPAK 517
N QA C P+ CS P + L KP K
Sbjct: 361 NSYQAYCVPLVCSSSYVPSLVQLQINKPGK 390
>At2g43420.1 68415.m05396 3-beta hydroxysteroid
dehydrogenase/isomerase family protein contains Pfam
profile PF01073 3-beta hydroxysteroid
dehydrogenase/isomerase domain; similar to
NAD(P)-dependent steroid dehydrogenase from Homo sapiens
[SP|Q15738], Mus musculus [SP|Q9R1J0]
Length = 561
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 588 WAVFSGDTFTAIVFQISLFTHASGFAGFSSTNGQILG 478
W FSG+TFT+ Q+ LF A G S +I G
Sbjct: 404 WFFFSGNTFTSSAAQL-LFIFAVALYGVSFVPSKIFG 439
>At1g06450.1 68414.m00683 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 360
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 390 GQFSRATHLPLSSFRYPSLHTHPALQDF 307
G + + THLP S+F YPS T A D+
Sbjct: 317 GTYVQLTHLPASTFAYPS-QTPSATVDY 343
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 193 GQFSRATHLPLSSFRYPSLHTHPALQDF 110
G + + THLP S+F YPS T A D+
Sbjct: 317 GTYVQLTHLPASTFAYPS-QTPSATVDY 343
>At1g02580.1 68414.m00209 maternal embryogenesis control protein /
MEDEA (MEA) nearly identical to MEDEA GB:AAC39446
GI:3089625 from [Arabidopsis thaliana]; contains Pfam
profile PF00856: SET domain
Length = 689
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 1/71 (1%)
Frame = +2
Query: 254 PMTCSKKDGPKICP-LVEEKSCKAGCVCKEGYLKDDSGKCVARENCPNSDLCSENEIYVN 430
P TC K G + CP L E C+ C C + + G C NC C+ +
Sbjct: 449 PCTCKSKCGQQ-CPCLTHENCCEKYCGCSKD-CNNRFGGC----NCAIGQ-CTNRQCPCF 501
Query: 431 CVQAQCSPMTC 463
+C P C
Sbjct: 502 AANRECDPDLC 512
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,728
Number of Sequences: 28952
Number of extensions: 383687
Number of successful extensions: 1187
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -