Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10574
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...   126   2e-30
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...   126   2e-30
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|...    29   0.59 
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    28   1.0  
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   3.1  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    26   5.5  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    26   5.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   9.6  
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac...    25   9.6  

>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  126 bits (305), Expect = 2e-30
 Identities = 58/83 (69%), Positives = 68/83 (81%)
 Frame = +2

Query: 2   GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 181
           GI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD
Sbjct: 2   GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLD 61

Query: 182 TGNFSWGSECSTRKTRIIDVVYN 250
           +GNFSWGSE  ++KTRII V Y+
Sbjct: 62  SGNFSWGSEGVSKKTRIIQVAYH 84



 Score = 77.0 bits (181), Expect = 2e-15
 Identities = 42/86 (48%), Positives = 53/86 (61%)
 Frame = +1

Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA 435
           NNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   
Sbjct: 87  NNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATSTP-----NPKSKHVQ 140

Query: 436 RKYLARQRLAKVEGALEEQFHTGRCW 513
           RK+ AR   +KV+ ALE QF  GR +
Sbjct: 141 RKHSARLGDSKVDSALETQFAAGRLY 166



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +3

Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 614
           G L A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score =  126 bits (305), Expect = 2e-30
 Identities = 58/83 (69%), Positives = 68/83 (81%)
 Frame = +2

Query: 2   GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 181
           GI+RD  HKR ATG KRA  RKKRK+ELGR  +NTR+GP+RIH VR RGGN K+RALRLD
Sbjct: 2   GITRDSRHKRSATGAKRAQYRKKRKFELGRQPSNTRIGPKRIHEVRVRGGNKKFRALRLD 61

Query: 182 TGNFSWGSECSTRKTRIIDVVYN 250
           +GNFSWGSE  ++KTRII V Y+
Sbjct: 62  SGNFSWGSEGVSKKTRIIQVAYH 84



 Score = 76.2 bits (179), Expect = 4e-15
 Identities = 42/86 (48%), Positives = 53/86 (61%)
 Frame = +1

Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA 435
           NNELVRT TL K+AIV +DA PFR WYE+HY + +G  KG K T          +S+   
Sbjct: 87  NNELVRTNTLTKSAIVQIDAAPFRVWYETHYGILMG-SKGKKATATP-----TPKSKHVQ 140

Query: 436 RKYLARQRLAKVEGALEEQFHTGRCW 513
           RK+ AR   +KV+ ALE QF  GR +
Sbjct: 141 RKHSARLGDSKVDSALETQFAAGRLY 166



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 25/38 (65%), Positives = 30/38 (78%)
 Frame = +3

Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 614
           G L A V+SRPGQ GR DGYILEG+EL FYLR++  K+
Sbjct: 163 GRLYAVVSSRPGQSGRCDGYILEGEELHFYLRRMAPKK 200


>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 207

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
 Frame = +2

Query: 14  DHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNF 193
           + W K   T  K+    +KRK  L R A   RL  + + S+ S+GG    +A + ++   
Sbjct: 32  EKWSKGVKTN-KKEQEAEKRKAALERKAERERLEKEEMESLPSKGGKGSKKAAKKNSSLD 90

Query: 194 SWGSE---CSTRKTRIIDVVYNALTMN 265
           ++ +E    ++   R ID   + L++N
Sbjct: 91  AFLNETPQTASYSARNIDDALDLLSLN 117


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase kinase
            Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
 Frame = +2

Query: 11   RDHWHKRRATGGKRAPIRKKRKY--ELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDT 184
            RD  +K +  G       K+ +   EL    +N  +  Q+   + S    T YRA+ LDT
Sbjct: 1083 RDRLYKSQLIGRVLDDTTKENRLLKELASSKSNITIRWQQGGLIGSGSFGTVYRAVNLDT 1142

Query: 185  GNFSWGSECSTRKTRI 232
            G+     E +  K RI
Sbjct: 1143 GDLMAVKEVALHKPRI 1158


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 267 QFIVNALYTTSMIRVLRVEHSDPQEKLPVSRR 172
           QF +  + T S  +V R  H DP  KLP  RR
Sbjct: 190 QFNLEGVKTKSGRKVHRPNHFDPLVKLPTRRR 221


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 335 YHCLNGVASTTTIAFLTRVFVRTNS 261
           ++C N V S T +  +  VFVR NS
Sbjct: 518 FYCSNEVLSLTALLSVPNVFVRPNS 542


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/59 (23%), Positives = 28/59 (47%)
 Frame = +1

Query: 313 ATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 489
           +TP     + H       KKG+K+  A++    ++R  + AR+  A +   K   ++E+
Sbjct: 754 STPDTTGSDIHIVSEKRGKKGSKVITAKKVSAKERREARRARRQTALEESLKAPISIED 812


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +3

Query: 105 PGSVLSVSTPFVHVVEILSTVRCVWTPVTSLG 200
           P  VLS   P++  +  L +  C+W P   LG
Sbjct: 682 PILVLSTMKPYLCNITFLGSHLCIWQPKILLG 713


>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 848

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 14  DHWHKRRATGGKRAPIRKKRKYE 82
           D W   +A G   +PIR+ ++Y+
Sbjct: 758 DEWKASKAFGANDSPIRENKRYK 780


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,567,887
Number of Sequences: 5004
Number of extensions: 50351
Number of successful extensions: 138
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)