Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10574
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0270 + 17135464-17135467,17135583-17135655,17136253-171365... 127 9e-30
04_03_0510 - 16659486-16659564,16659772-16659947,16660464-166607... 126 1e-29
07_01_0467 - 3524598-3524837,3524939-3525466,3526242-3526892,352... 33 0.26
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 31 0.61
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 31 0.81
11_01_0551 + 4361640-4363386,4363443-4363687 31 1.1
11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861 29 2.5
04_03_0549 - 17043135-17043351,17043641-17043846 29 4.3
12_02_0398 - 18586985-18587480,18587669-18587687,18588317-185885... 28 7.5
04_04_0799 + 28143878-28145042,28145127-28145290,28146008-281460... 28 7.5
>02_03_0270 +
17135464-17135467,17135583-17135655,17136253-17136583,
17136916-17136969,17137219-17137394,17137607-17137685
Length = 238
Score = 127 bits (306), Expect = 9e-30
Identities = 61/85 (71%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRL 178
GISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRL
Sbjct: 2 GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRL 61
Query: 179 DTGNFSWGSECSTRKTRIIDVVYNA 253
DTGN+SWGSE TRKTRI+DVVYNA
Sbjct: 62 DTGNYSWGSEAVTRKTRILDVVYNA 86
Score = 72.1 bits (169), Expect = 4e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = +3
Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 614
G LLAC++SRPGQCGRADGYILEGKELEFY++K++ K+
Sbjct: 195 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 232
Score = 66.5 bits (155), Expect = 2e-11
Identities = 32/52 (61%), Positives = 40/52 (76%), Gaps = 2/52 (3%)
Frame = +1
Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLT--EAEEAI 405
NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A +AE A+
Sbjct: 88 NNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAEHAL 139
>04_03_0510 -
16659486-16659564,16659772-16659947,16660464-16660797,
16661564-16661636,16661780-16661783
Length = 221
Score = 126 bits (305), Expect = 1e-29
Identities = 61/85 (71%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = +2
Query: 2 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRL 178
GISRD HKRRATGGK+ RKKRKYELGR ANT+L + + VR RGGN K+RALRL
Sbjct: 2 GISRDSMHKRRATGGKQKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNLKWRALRL 61
Query: 179 DTGNFSWGSECSTRKTRIIDVVYNA 253
DTGN+SWGSE TRKTRI+DVVYNA
Sbjct: 62 DTGNYSWGSEAVTRKTRILDVVYNA 86
Score = 81.0 bits (191), Expect = 8e-16
Identities = 44/92 (47%), Positives = 57/92 (61%), Gaps = 8/92 (8%)
Frame = +1
Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKK--------GAKLTEAEEAIIN 411
NNELVRT+TLVK+AIV VDA PF+QWY +HY + +GRKK A+ E E A
Sbjct: 88 NNELVRTQTLVKSAIVQVDAAPFKQWYLTHYGVDIGRKKKAPAAKKDAAEGQEGEAATEE 147
Query: 412 KKRSQKTARKYLARQRLAKVEGALEEQFHTGR 507
K+S RK RQ+ ++ +EEQF +GR
Sbjct: 148 AKKSNHVVRKLEKRQQTRTLDSHIEEQFGSGR 179
Score = 72.1 bits (169), Expect = 4e-13
Identities = 29/38 (76%), Positives = 36/38 (94%)
Frame = +3
Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 614
G LLAC++SRPGQCGRADGYILEGKELEFY++K++ K+
Sbjct: 178 GRLLACISSRPGQCGRADGYILEGKELEFYMKKLQRKK 215
>07_01_0467 -
3524598-3524837,3524939-3525466,3526242-3526892,
3527015-3527500,3527580-3527792,3527885-3528174,
3528276-3528418,3528633-3528855,3528983-3529160,
3529598-3529867
Length = 1073
Score = 32.7 bits (71), Expect = 0.26
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Frame = +2
Query: 71 RKYELGRPAANTRLGPQRIHSVRSR----GGNTKYRALRLDTGN-FSWGS 205
R+ +LG P+ +T+ P+R+ S+++R K+ A DTG F+WGS
Sbjct: 271 REGQLGYPSVDTQPTPRRVSSLKARIISVAAANKHSAAVADTGEVFTWGS 320
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 31.5 bits (68), Expect = 0.61
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 344 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLMHYTQHQ*YGFCELNIPIP 198
C Y L GV S IA L+ + R SL+ H+ YG L +P+P
Sbjct: 426 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPVP 474
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 31.1 bits (67), Expect = 0.81
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 344 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLMHYTQHQ*YGFCELNIPIP 198
C Y L GV S IA L+ + R SL+ H+ YG L +P+P
Sbjct: 434 CFDYLSLGGVFSNGPIALLSGLNPRPLSLVAHFFAVAIYGVGRLMLPLP 482
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 367 KKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQ-FHTGRCWLAWRVAQVSV 543
+ G+ T+A E+I KK+ + +K + + A V A EE+ G L WR+ S
Sbjct: 289 QNGSFTTQAAESIKEKKKRAEKKKKKKKKVKAASVAAAAEEEGGGGGAASLGWRLCNTSA 348
Query: 544 VAPMV 558
A +
Sbjct: 349 GADYI 353
>11_06_0744 - 26850761-26850771,26850794-26850861,26851464-26851861
Length = 158
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = +2
Query: 26 KRRATGGKRAPIRKKRKYELGRPAA---NTRLGPQRIHSVRSRGGNTKYRALR 175
KRR GG+RA R+K + E GR A R G R R RGG + R R
Sbjct: 81 KRRRGGGRRAAGRRKEEEEAGRRKAGEETRRRGAGR--RKRRRGGRRRRRRRR 131
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 26 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 160
KRR GG+RA R+K + E GR A R RGG +
Sbjct: 45 KRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 89
Score = 27.9 bits (59), Expect = 7.5
Identities = 16/45 (35%), Positives = 21/45 (46%)
Frame = +2
Query: 26 KRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTK 160
+RR GG+RA R+K + E GR A R RGG +
Sbjct: 9 RRRRGGGRRAAGRRKEEEEAGRRKAGEEARRGAGKRKRRRGGGRR 53
>04_03_0549 - 17043135-17043351,17043641-17043846
Length = 140
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 348 IMRLIPLPEWSCIYYNNCILDKGLCTHQFIVNAL 247
++ L+ +P+WS +YY N +DK L I AL
Sbjct: 72 LILLLLVPKWSIVYYLNSKIDKKLYNWSMIGAAL 105
>12_02_0398 -
18586985-18587480,18587669-18587687,18588317-18588544,
18589699-18589966
Length = 336
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/41 (31%), Positives = 18/41 (43%)
Frame = +2
Query: 11 RDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHS 133
R H T G+ P + Y LG P A +GP +H+
Sbjct: 210 RPETHTFHLTVGEMVPTLQDVSYLLGLPIAGAAVGPTMVHA 250
>04_04_0799 +
28143878-28145042,28145127-28145290,28146008-28146070,
28146268-28146491,28146850-28147555
Length = 773
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +1
Query: 370 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHT 501
KG+KL + E + + R++ A R LA GAL + H+
Sbjct: 4 KGSKLEDQEAVALCRGRAELLAAAVRHRYALADAHGALADSLHS 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,656,016
Number of Sequences: 37544
Number of extensions: 366235
Number of successful extensions: 1105
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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