Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10574
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)              116   2e-26
SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)           31   1.1  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)                    30   1.9  
SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  

>SB_39807| Best HMM Match : Ribosomal_S8e (HMM E-Value=0)
          Length = 192

 Score =  116 bits (278), Expect = 2e-26
 Identities = 55/86 (63%), Positives = 65/86 (75%)
 Frame = +1

Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA 435
           NNELVRTKTLVKN IV VD+TPFRQWYE+HY +P+GRKK  + TE E+ I+NKKRS    
Sbjct: 71  NNELVRTKTLVKNCIVQVDSTPFRQWYEAHYAIPIGRKKTKQPTEEEQEILNKKRSNHCT 130

Query: 436 RKYLARQRLAKVEGALEEQFHTGRCW 513
           RK  AR+  AKV   +EEQF TGR +
Sbjct: 131 RKLEARKANAKVAPGMEEQFVTGRLY 156



 Score =  110 bits (265), Expect = 8e-25
 Identities = 49/66 (74%), Positives = 56/66 (84%)
 Frame = +2

Query: 56  PIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRII 235
           P+R KRK+ELGRP ANT++G +RIH VR+RGGN K+RA RLDT NFSWGSE  TRK RII
Sbjct: 4   PLRHKRKFELGRPPANTKIGTKRIHEVRTRGGNRKFRAFRLDTENFSWGSESCTRKARII 63

Query: 236 DVVYNA 253
           DVVYNA
Sbjct: 64  DVVYNA 69



 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 28/39 (71%), Positives = 35/39 (89%)
 Frame = +3

Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRA 617
           G L ACV+SRPGQ GR DGYILEGKELEFY++K+K+++A
Sbjct: 153 GRLYACVSSRPGQSGRCDGYILEGKELEFYIKKLKARKA 191


>SB_22712| Best HMM Match : Ribosomal_S8e (HMM E-Value=0.068)
          Length = 147

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESH 345
           N E +    +VK +IV VD  PF  W++ +
Sbjct: 84  NKEHIERNVIVKGSIVQVDNKPFEDWFQEY 113



 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = +2

Query: 116 PQRIHSVRSRGGNTKYRALRLDTGNFSWGSECSTRKTRIIDVVYN 250
           P++I   ++ GG+TK +ALR++ G ++  S+    +  I+ V+++
Sbjct: 37  PEKIKERKAYGGHTKIKALRVNKGVYTLKSQGVEVEAPILSVMHS 81


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 32  RATGGKRAPIRKKRKYELGRPAANTRLGP 118
           R  GG R P+++   +E  +P+ N R GP
Sbjct: 769 RRGGGSRVPVKRSSSFENRKPSPNRRRGP 797


>SB_810| Best HMM Match : TAF4 (HMM E-Value=4.7e-31)
          Length = 883

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +1

Query: 370 KGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 507
           + AKL + EE II K+ +  TA   +  ++  K++ ALE    +G+
Sbjct: 701 RAAKLQQEEEEIIRKREANNTALAAIGPRKKRKLDEALEATRPSGQ 746


>SB_38738| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 412 KKRSQKTARKYLARQRLAKVEGALEE 489
           K+R QK  + Y  RQR  ++  +LEE
Sbjct: 15  KRRKQKATKSYAERQRRTRINKSLEE 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,080,798
Number of Sequences: 59808
Number of extensions: 414585
Number of successful extensions: 1106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1105
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)