Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10574
(658 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal prote... 128 5e-30
AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical... 29 2.9
U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical pr... 28 6.7
U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug resis... 28 6.7
U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.7
U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.7
U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug resis... 28 6.7
U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug resis... 28 6.7
AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug res... 28 6.7
>U40799-7|AAA81485.1| 208|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 8 protein.
Length = 208
Score = 128 bits (308), Expect = 5e-30
Identities = 57/84 (67%), Positives = 67/84 (79%)
Frame = +2
Query: 2 GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQRIHSVRSRGGNTKYRALRLD 181
GISRD WHKR TG + KKRK+ELGRPAANT++G R+ VR+RGGN KYRALRLD
Sbjct: 2 GISRDSWHKRYKTGATQPVPHKKRKFELGRPAANTKIGAHRVRLVRTRGGNEKYRALRLD 61
Query: 182 TGNFSWGSECSTRKTRIIDVVYNA 253
+GNFSW SE +TRKTRI+D +YNA
Sbjct: 62 SGNFSWASEQTTRKTRIVDTMYNA 85
Score = 123 bits (296), Expect = 1e-28
Identities = 57/84 (67%), Positives = 66/84 (78%)
Frame = +1
Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA 435
NNELVRTKTLVK AI+ VDA PFRQWYE+HY LPL RKK AKL+E + AI+NKKRS T
Sbjct: 87 NNELVRTKTLVKGAIISVDAAPFRQWYEAHYALPLARKKNAKLSEEDNAILNKKRSHHTM 146
Query: 436 RKYLARQRLAKVEGALEEQFHTGR 507
+KY RQ+ A V+ L EQF+TGR
Sbjct: 147 KKYTERQKTAAVDALLIEQFNTGR 170
Score = 61.7 bits (143), Expect = 4e-10
Identities = 27/39 (69%), Positives = 35/39 (89%)
Frame = +3
Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRA 617
G LLA ++S PGQ G+A+GYILEGKEL+FYLRKI++K+A
Sbjct: 169 GRLLARISSSPGQVGQANGYILEGKELDFYLRKIRAKKA 207
>AL161712-13|CAC70137.1| 830|Caenorhabditis elegans Hypothetical
protein Y66D12A.17 protein.
Length = 830
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -2
Query: 264 FIVNALYTTSMIRVLRVEHSDPQEKL 187
FI A+Y SM R LR+ H DP+ L
Sbjct: 743 FIEKAIYHVSMARCLRLMHKDPRVHL 768
>U88315-4|AAB42369.3| 778|Caenorhabditis elegans Hypothetical
protein C37H5.5 protein.
Length = 778
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/42 (35%), Positives = 27/42 (64%)
Frame = +1
Query: 364 RKKGAKLTEAEEAIINKKRSQKTARKYLARQRLAKVEGALEE 489
+K G A++ I K+++ KTA+KY +++LA++E L E
Sbjct: 424 KKSGKDALIAKKYQIKKEKASKTAKKY--KKQLARLEADLLE 463
>U66260-1|AAB07021.1| 1540|Caenorhabditis elegans multidrug
resistance related protein1 protein.
Length = 1540
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 167 ALRLDTGNFSWGSECSTRKTRIIDVVYN 250
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-8|ABA03118.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform e protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 167 ALRLDTGNFSWGSECSTRKTRIIDVVYN 250
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-7|AAM69107.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform c protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 167 ALRLDTGNFSWGSECSTRKTRIIDVVYN 250
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-6|AAL06032.1| 1534|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform b protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 167 ALRLDTGNFSWGSECSTRKTRIIDVVYN 250
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>U41554-5|AAD31550.2| 1528|Caenorhabditis elegans Multidrug
resistance protein familyprotein 1, isoform a protein.
Length = 1528
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 167 ALRLDTGNFSWGSECSTRKTRIIDVVYN 250
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
>AB199793-1|BAD88409.1| 1534|Caenorhabditis elegans multidrug
resistance-associatedprotein protein.
Length = 1534
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +2
Query: 167 ALRLDTGNFSWGSECSTRKTRIIDVVYN 250
A+++D G+F+WGS+ RK + D+ +N
Sbjct: 613 AIKMDGGSFAWGSKEEDRK--LHDITFN 638
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,484,921
Number of Sequences: 27780
Number of extensions: 297332
Number of successful extensions: 932
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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