Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10574
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) riboso...   126   2e-29
At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S ri...   125   3e-29
At2g22830.1 68415.m02711 squalene monooxygenase, putative / squa...    34   0.096
At4g37760.1 68417.m05345 squalene monooxygenase, putative / squa...    32   0.39 
At1g73260.1 68414.m08478 trypsin and protease inhibitor family p...    29   2.7  
At1g32400.2 68414.m03998 senescence-associated family protein co...    27   8.3  
At1g32400.1 68414.m03997 senescence-associated family protein co...    27   8.3  

>At5g20290.1 68418.m02415 40S ribosomal protein S8 (RPS8A) ribosomal
           protein S8 - Zea mays, PIR:T04088
          Length = 222

 Score =  126 bits (303), Expect = 2e-29
 Identities = 58/85 (68%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRL 178
           GISRD  HKRRATGGK+   RKKRKYE+GR  ANT+L   + +  +R RGGN K+RALRL
Sbjct: 2   GISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALRL 61

Query: 179 DTGNFSWGSECSTRKTRIIDVVYNA 253
           DTGN+SWGSE +TRKTR++DVVYNA
Sbjct: 62  DTGNYSWGSEATTRKTRVLDVVYNA 86



 Score = 81.4 bits (192), Expect = 5e-16
 Identities = 48/94 (51%), Positives = 59/94 (62%), Gaps = 10/94 (10%)
 Frame = +1

Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGR-KKGAKLT-----EAEEAII--- 408
           NNELVRTKTLVK+AIV VDA PF+QWY SHY + LGR KK A  T     E EEA +   
Sbjct: 88  NNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGVELGRKKKSASSTKKDGEEGEEAAVAAP 147

Query: 409 -NKKRSQKTARKYLARQRLAKVEGALEEQFHTGR 507
              K+S    RK  +RQ    ++  +E+QF +GR
Sbjct: 148 EEVKKSNHLLRKIASRQEGRSLDSHIEDQFASGR 181



 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 30/38 (78%), Positives = 36/38 (94%)
 Frame = +3

Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKR 614
           G LLAC++SRPGQCGRADGYILEGKELEFY++KI+ K+
Sbjct: 180 GRLLACISSRPGQCGRADGYILEGKELEFYMKKIQKKK 217


>At5g59240.1 68418.m07424 40S ribosomal protein S8 (RPS8B) 40S
           ribosomal protein S8, Prunus armeniaca, EMBL:AF071889
          Length = 210

 Score =  125 bits (301), Expect = 3e-29
 Identities = 60/85 (70%), Positives = 67/85 (78%), Gaps = 1/85 (1%)
 Frame = +2

Query: 2   GISRDHWHKRRATGGKRAPIRKKRKYELGRPAANTRLGPQR-IHSVRSRGGNTKYRALRL 178
           GISRD  HKRRATGGK+   RKKRKYELGR  ANT+L   + +  +R RGGN K+RALRL
Sbjct: 2   GISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRL 61

Query: 179 DTGNFSWGSECSTRKTRIIDVVYNA 253
           DTGNFSWGSE  TRKTRI+DV YNA
Sbjct: 62  DTGNFSWGSEAVTRKTRILDVAYNA 86



 Score = 77.4 bits (182), Expect = 8e-15
 Identities = 42/84 (50%), Positives = 52/84 (61%)
 Frame = +1

Query: 256 NNELVRTKTLVKNAIVVVDATPFRQWYESHYTLPLGRKKGAKLTEAEEAIINKKRSQKTA 435
           NNELVRT+TLVK+AIV VDA PF+Q Y  HY + +GRKK  +    EE     K+S    
Sbjct: 88  NNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGVDIGRKKKGEAVTTEEV----KKSNHVQ 143

Query: 436 RKYLARQRLAKVEGALEEQFHTGR 507
           RK   RQ    ++  LEEQF +GR
Sbjct: 144 RKLEMRQEGRALDSHLEEQFSSGR 167



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 31/41 (75%), Positives = 37/41 (90%)
 Frame = +3

Query: 501 GALLACVASRPGQCGRADGYILEGKELEFYLRKIKSKRANN 623
           G LLAC+ASRPGQCGRADGYILEGKELEFY++K++ K+  N
Sbjct: 166 GRLLACIASRPGQCGRADGYILEGKELEFYMKKLQKKKGKN 206


>At2g22830.1 68415.m02711 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 585

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 344 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLMHYTQHQ*YGFCELNIPIP 198
           C  Y  L GV S+  +A L+ +  R  SL++H+     Y  C L +P P
Sbjct: 492 CFDYLSLGGVFSSGPVALLSGLNPRPLSLVLHFFAVAIYAVCRLMLPFP 540


>At4g37760.1 68417.m05345 squalene monooxygenase, putative /
           squalene epoxidase, putative similar to SP|O65404 (SE
           1,1), SP|O65402 (SE 1,2), SP|O65403 (SE 2)
          Length = 525

 Score = 31.9 bits (69), Expect = 0.39
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -3

Query: 344 CDSYHCLNGVASTTTIAFLTRVFVRTNSLLMHYTQHQ*YGFCELNIPIP 198
           C  Y  L GV S+  +A L+ +  R  SL++H+     +G   L +P+P
Sbjct: 424 CFDYLSLGGVCSSGPVALLSGLNPRPMSLVLHFFAVAIFGVGRLLVPLP 472


>At1g73260.1 68414.m08478 trypsin and protease inhibitor family
           protein / Kunitz family protein similar to trypsin
           inhibitor propeptide [Brassica oleracea] GI:841208;
           contains Pfam profile PF00197: Trypsin and protease
           inhibitor
          Length = 215

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 265 LVRTKTLVKNAI-VVVDATPFRQWYESHYTLPLGRKKGAKLTEA 393
           L  T  L  NA   VVD      ++ES+Y LP+ R +G  LT A
Sbjct: 16  LALTAVLASNAYGAVVDIDGNAMFHESYYVLPVIRGRGGGLTLA 59


>At1g32400.2 68414.m03998 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 194 SWGSECSTRKTRIIDVVYNALTMNWCVQR 280
           SW  E  + +T   D +YN L  NW + R
Sbjct: 137 SWRDELPSDRTGNFDTIYNFLRENWKIVR 165


>At1g32400.1 68414.m03997 senescence-associated family protein
           contains Pfam profile PF00335: Tetraspanin family
          Length = 280

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 194 SWGSECSTRKTRIIDVVYNALTMNWCVQR 280
           SW  E  + +T   D +YN L  NW + R
Sbjct: 137 SWRDELPSDRTGNFDTIYNFLRENWKIVR 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,765,267
Number of Sequences: 28952
Number of extensions: 276989
Number of successful extensions: 756
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)