Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10572
         (666 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7; Endoptery...    40   0.041
UniRef50_A7SZP3 Cluster: Predicted protein; n=1; Nematostella ve...    33   4.7  

>UniRef50_Q2F5N9 Cluster: Nucleoplasmin isoform 2; n=7;
           Endopterygota|Rep: Nucleoplasmin isoform 2 - Bombyx mori
           (Silk moth)
          Length = 187

 Score = 40.3 bits (90), Expect = 0.041
 Identities = 28/84 (33%), Positives = 29/84 (34%)
 Frame = +2

Query: 2   LVQGSGPVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSQFKEDENKRKGAGXXXXX 181
           LVQGSGPV                                 SQFKEDENKRKGAG     
Sbjct: 94  LVQGSGPVHLIGHHLLGALLEEFEDMEEMEEEMLDEEEGDDSQFKEDENKRKGAGKRKPN 153

Query: 182 XXXXXXXVNPRAKKRKCRIMPKAK 253
                    P+ KK K     K K
Sbjct: 154 EDEDNEEGEPKGKKAKMSNNAKGK 177


>UniRef50_A7SZP3 Cluster: Predicted protein; n=1; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 264

 Score = 33.5 bits (73), Expect = 4.7
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 283 HFLAFFLGDALCLWHYSTFSLFCPWVHLLHYLHPHSV 173
           H LAF     LC WH+ T     P +    +LH H++
Sbjct: 220 HMLAFMYAGELCCWHWRTMDSHIPTLTCHIHLHRHAI 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,868,937
Number of Sequences: 1657284
Number of extensions: 9194811
Number of successful extensions: 18212
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18205
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 50826451017
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)