Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10572
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.2  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   3.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    22   5.2  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 14/52 (26%), Positives = 20/52 (38%)
 Frame = -3

Query: 451  SSNHARVDTMLTYAELPH*VVITSWVVAPSPAQFRYNYT*NGDGTTSPKWVS 296
            +  + R    L Y E+ H +    W V   P +    Y   GD     +WVS
Sbjct: 1667 AGEYTRAAGFLAYYEICHNIKTQGWTVVQDPNRRMGPYAYKGD-----QWVS 1713


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +2

Query: 206 NPRAKKRKCRIMPKAKRIAQEECQEMNKPPGDP 304
           NP  K+  C ++ K K    E   + +  PG P
Sbjct: 183 NPTIKEDFCAVLWKDKSTDNEGVSDCDSEPGIP 215


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 275 QEMNKPPGDP 304
           Q M++PPGDP
Sbjct: 429 QMMHRPPGDP 438


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,510
Number of Sequences: 336
Number of extensions: 2451
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)