Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10572
         (666 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38080.1 68418.m04588 hypothetical protein                          29   2.1  
At4g12750.1 68417.m02002 expressed protein                             29   2.1  

>At5g38080.1 68418.m04588 hypothetical protein 
          Length = 157

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = -3

Query: 274 AFFLGDALCLWHYSTFSLFCPWVHLLHYLHPHSV---ALPCSFSFILIFL 134
           A+F+G  +C     TF  FC +VHLL+ + PH      LPC   F+ + +
Sbjct: 69  AYFVG-RIC----HTFG-FCIFVHLLYSVSPHLALYFGLPCLLGFVAVMI 112


>At4g12750.1 68417.m02002 expressed protein 
          Length = 1108

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 206 NPRAKKRKCRIMPKAKRIAQEECQEMNKP-PGDPF 307
           NP  +K KCR   K K   +E C E+++  PG+P+
Sbjct: 592 NPALRKVKCRKRRKHKSKMREVCSEIDESHPGEPW 626


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,631,725
Number of Sequences: 28952
Number of extensions: 201217
Number of successful extensions: 429
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)