Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10569
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce...   102   3e-23
SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein L24|Schizosac...   102   3e-23
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi...    61   1e-10
SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|ch...    27   2.1  
SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr 2...    26   3.7  
SPCC63.08c |ppk36|atg1|serine/threonine protein kinase Ppk36|Sch...    25   6.5  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.6  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.6  

>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 149

 Score =  102 bits (245), Expect = 3e-23
 Identities = 46/87 (52%), Positives = 61/87 (70%)
 Frame = -3

Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
           MK+ +C++SG K+YPG G+  V+ D K F F+N K ++  L R+NPR ++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 323 KGPEEDQAKSRTRRTQKFQRAIVVLHL 243
           KG  E+ AK RTRRT K QR IV  +L
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANL 87



 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 252 ASLGDIMAKRNMKPEVRKAQR 190
           A+L  I  KRN +PEVR A R
Sbjct: 85  ANLDVIKEKRNQRPEVRAAAR 105


>SPCC330.14c |rpl2402|rpl24-2|60S ribosomal protein
           L24|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 149

 Score =  102 bits (245), Expect = 3e-23
 Identities = 46/87 (52%), Positives = 61/87 (70%)
 Frame = -3

Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
           MK+ +C++SG K+YPG G+  V+ D K F F+N K ++  L R+NPR ++WTVLYRR  K
Sbjct: 1   MKVEVCSFSGSKVYPGAGRLFVRGDNKVFRFVNKKSESLFLQRKNPRRLSWTVLYRRMHK 60

Query: 323 KGPEEDQAKSRTRRTQKFQRAIVVLHL 243
           KG  E+ AK RTRRT K QR IV  +L
Sbjct: 61  KGISEEHAKKRTRRTVKHQRGIVGANL 87



 Score = 25.4 bits (53), Expect = 4.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -2

Query: 252 ASLGDIMAKRNMKPEVRKAQR 190
           A+L  I  KRN +PEVR A R
Sbjct: 85  ANLDVIKEKRNQRPEVRAAAR 105


>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 192

 Score = 60.9 bits (141), Expect = 1e-10
 Identities = 29/72 (40%), Positives = 37/72 (51%)
 Frame = -3

Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
           M++  C +    +YPGHG   V+ D K F F  SKC     M+RNPR V WT  YR+   
Sbjct: 1   MRVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKAHG 60

Query: 323 KGPEEDQAKSRT 288
           K    D A + T
Sbjct: 61  KEMVYDTALAVT 72


>SPCC1840.05c |||phosphomannomutase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 587

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 485 AYSGYKIYPGHGKAMVKVDGKTFA 414
           AY+GYK+Y G+G A++    K  A
Sbjct: 154 AYNGYKVYWGNGCAIIPPHDKGIA 177


>SPBC337.07c |||carboxypeptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 417 EGFSIHFNHGLAMAWIYFVSTI 482
           +GF  H+  G A+ W+YF + +
Sbjct: 430 DGFHKHYLPGTAIDWVYFAADV 451


>SPCC63.08c |ppk36|atg1|serine/threonine protein kinase
           Ppk36|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 293 DSLLDLPLGPF*TCACTGQSRLLYE 367
           D+LLD PL PF       +S +LYE
Sbjct: 633 DTLLDRPLTPFSLVMLAKESYVLYE 657


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -1

Query: 478 VDTKYIQAMARPWLKWM 428
           V+ K+IQ + + W+KW+
Sbjct: 137 VEQKWIQFLHKSWMKWL 153


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +2

Query: 179 MACSLC-ALRTSGFILRLAIMSPSEAQQSHV 268
           M CSL  AL TSGF    AIM  +EA + ++
Sbjct: 804 MMCSLAMALPTSGFPNMTAIMMENEAGKRYL 834


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,700,384
Number of Sequences: 5004
Number of extensions: 32517
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)