Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10569
(508 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0279 - 23794964-23795111,23795486-23795634,23796120-237962... 75 3e-14
01_06_1123 + 34671365-34671883,34672366-34672625,34673045-346731... 73 1e-13
07_01_0849 + 6896930-6896996,6897453-6897474,6897615-6897690,689... 73 2e-13
07_01_1199 + 11391638-11391718,11393477-11393590,11393690-113938... 62 2e-10
01_05_0105 - 18155135-18155297,18155379-18155515,18155621-181557... 38 0.006
10_08_0259 + 16274430-16274747,16275180-16275242,16275329-162754... 29 2.1
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099 28 5.0
03_01_0649 + 4757352-4758167 28 5.0
11_04_0207 - 14869288-14869291,14869484-14869776 27 6.5
04_04_1400 - 33259716-33260069,33260172-33260219,33260471-332605... 27 8.7
03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790 27 8.7
>05_05_0279 -
23794964-23795111,23795486-23795634,23796120-23796221,
23796309-23796384,23796578-23796588
Length = 161
Score = 74.9 bits (176), Expect = 3e-14
Identities = 35/84 (41%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Frame = -3
Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
+K LC +SG KIYPG G ++ D + F F NSKC R P +TWT +YR++ K
Sbjct: 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
Query: 323 KGPEEDQAKSRTRRTQK-FQRAIV 255
K + K R R T+K + R+IV
Sbjct: 63 KDIHAEAVKKRRRTTKKPYSRSIV 86
>01_06_1123 + 34671365-34671883,34672366-34672625,34673045-34673143,
34673237-34675178,34675588-34675658,34676158-34676307,
34676963-34677038,34677131-34677232,34677707-34677855,
34678214-34678364
Length = 1172
Score = 73.3 bits (172), Expect = 1e-13
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = -3
Query: 491 LCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPE 312
LC +SG KIYPG G ++ D + F F NSKC R P +TWT +YR++ KK
Sbjct: 1017 LCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 1076
Query: 311 EDQAKSRTRRTQK-FQRAIV 255
+ K R R T+K + R+IV
Sbjct: 1077 AEAVKKRRRTTKKPYSRSIV 1096
>07_01_0849 +
6896930-6896996,6897453-6897474,6897615-6897690,
6897775-6897876,6898156-6898304,6898637-6898784
Length = 187
Score = 72.5 bits (170), Expect = 2e-13
Identities = 34/80 (42%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Frame = -3
Query: 491 LCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPE 312
LC +SG KIYPG G ++ D + F F NSKC R P +TWT +YR++ KK
Sbjct: 33 LCRFSGAKIYPGKGIRFIRADSQVFLFSNSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIH 92
Query: 311 EDQAKSRTRRTQK-FQRAIV 255
+ K R R T+K + R+IV
Sbjct: 93 AEAVKKRRRTTKKPYSRSIV 112
>07_01_1199 +
11391638-11391718,11393477-11393590,11393690-11393826,
11393905-11394064
Length = 163
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Frame = -3
Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
M+L C + +YPGHG V+ D K F F SKC M+RNPR V WT YR
Sbjct: 1 MRLEKCWFCSSTVYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAYRCLHG 60
Query: 323 KGPEED---QAKSRTRRTQKFQRAIVVLHLVTLWLSVI*SLKYVKRRENRPLRRQRHK 159
K +D + + + R +++ R + L +S+I +++ +++++ R+++ K
Sbjct: 61 KDMTQDSTFEFERKRNRPERYDRNVTEQTLKA--ISLITKIRHERQKKHITERQKQGK 116
>01_05_0105 -
18155135-18155297,18155379-18155515,18155621-18155734,
18155768-18155806,18156838-18156993
Length = 202
Score = 37.5 bits (83), Expect = 0.006
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = -3
Query: 419 FAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQR 264
F F SKC M+RNPR V WT YR K +D R+ + +R
Sbjct: 67 FRFCRSKCHKNFKMKRNPRKVKWTKAYRCLHGKDMTQDSTFEFERKRNRPER 118
>10_08_0259 +
16274430-16274747,16275180-16275242,16275329-16275424,
16275526-16275618,16276415-16276605,16276684-16276921,
16277805-16277900,16278324-16278404,16278532-16278939,
16279048-16279331,16279460-16279547,16279630-16279830,
16280032-16280118,16280119-16280238,16280536-16280708,
16281914-16282055,16282292-16282414,16282601-16282656,
16282735-16283038,16283154-16283283,16283491-16283549,
16283829-16284061,16285480-16285527,16285765-16285843,
16285925-16286169,16286338-16286722
Length = 1446
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 338 RRKFKKGPEEDQAKSRTRRTQKFQRAIVVLHL 243
RRK++K PEED AK T+R Q+ + HL
Sbjct: 360 RRKYRKVPEEDDAK-MTKRLQRHLKERRTRHL 390
>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
Length = 575
Score = 27.9 bits (59), Expect = 5.0
Identities = 19/43 (44%), Positives = 25/43 (58%)
Frame = -2
Query: 417 RIPEFKM*RRPFDEEESSYSNLDCPVQAQVQKGPRGRSSKESY 289
R+P +M RR DEE +SYS L VQ + PR +S +E Y
Sbjct: 122 RVPG-EMKRR--DEEGNSYSYLPVAVQIGLLSYPRQQSREEDY 161
>03_01_0649 + 4757352-4758167
Length = 271
Score = 27.9 bits (59), Expect = 5.0
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 182 ACSLCALRTSGFILRLAIMSPSEAQQSHV 268
ACS CALRT G +L A++ + A S V
Sbjct: 85 ACSPCALRTLGAVLAAALLLGAAAALSAV 113
>11_04_0207 - 14869288-14869291,14869484-14869776
Length = 98
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 350 SRLLYEDSSSSNGRRHILNSGMR 418
SR+L+E SSSSNGRR+I +R
Sbjct: 43 SRMLWE-SSSSNGRRYISYDALR 64
>04_04_1400 -
33259716-33260069,33260172-33260219,33260471-33260596,
33260850-33260900,33260963-33261055,33261217-33261272,
33261465-33261522,33262306-33262365,33262513-33262623,
33263368-33263949,33264026-33264097
Length = 536
Score = 27.1 bits (57), Expect = 8.7
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -3
Query: 428 GKTFAFLNSKCDAAHL-MRRNPRTVTWTVLY 339
G L+S A H+ +RRNP+ + W ++Y
Sbjct: 469 GSAIRQLDSIFSAGHIFLRRNPKALVWAMVY 499
>03_06_0356 + 33350365-33350707,33351683-33351799,33352663-33352790
Length = 195
Score = 27.1 bits (57), Expect = 8.7
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -2
Query: 276 KVPTCDCCASLGDIMA 229
+ PT DCCA LG ++A
Sbjct: 55 RAPTRDCCAGLGQVVA 70
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,418,959
Number of Sequences: 37544
Number of extensions: 226546
Number of successful extensions: 520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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