Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10569
(508 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40) 127 5e-30
SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07) 87 1e-17
SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 84 7e-17
SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 84 7e-17
SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 84 7e-17
SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07) 84 7e-17
SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07) 81 4e-16
SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07) 81 7e-16
SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 7e-04
SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.7
SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10) 27 8.9
>SB_24372| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.5e-40)
Length = 154
Score = 127 bits (307), Expect = 5e-30
Identities = 57/82 (69%), Positives = 65/82 (79%)
Frame = -3
Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
MKL LC YSGYKIYPGHGK V+ DGK F FLN +C+ A LMRRNPR VTWTVLYRRK K
Sbjct: 1 MKLELCNYSGYKIYPGHGKRYVRQDGKVFNFLNKRCERALLMRRNPREVTWTVLYRRKHK 60
Query: 323 KGPEEDQAKSRTRRTQKFQRAI 258
KG +E+ +K RTRR KFQR++
Sbjct: 61 KGTQEEVSKKRTRRNIKFQRSV 82
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 60 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 106
>SB_35727| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.1e-07)
Length = 139
Score = 86.6 bits (205), Expect = 1e-17
Identities = 38/60 (63%), Positives = 46/60 (76%)
Frame = -3
Query: 437 KVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAI 258
K GK F +LN +C+ A LMRRNPR VTWTVLYRRK KKG +E+ +K RTRR KFQR++
Sbjct: 38 KFQGKVFNYLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 97
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 75 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 121
>SB_44699| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 113
Score = 83.8 bits (198), Expect = 7e-17
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = -3
Query: 425 KTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAI 258
K F FLN +C+ A LMRRNPR VTWTVLYRRK KKG +E+ +K RTRR KFQR++
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 62
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 86
>SB_32312| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 83.8 bits (198), Expect = 7e-17
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = -3
Query: 425 KTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAI 258
K F FLN +C+ A LMRRNPR VTWTVLYRRK KKG +E+ +K RTRR KFQR++
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 62
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 86
>SB_5679| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 83.8 bits (198), Expect = 7e-17
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = -3
Query: 425 KTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAI 258
K F FLN +C+ A LMRRNPR VTWTVLYRRK KKG +E+ +K RTRR KFQR++
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 62
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 86
>SB_6626| Best HMM Match : Ribosomal_L24e (HMM E-Value=2.2e-07)
Length = 90
Score = 83.8 bits (198), Expect = 7e-17
Identities = 37/56 (66%), Positives = 44/56 (78%)
Frame = -3
Query: 425 KTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAI 258
K F FLN +C+ A LMRRNPR VTWTVLYRRK KKG +E+ +K RTRR KFQR++
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRKHKKGTQEEVSKKRTRRNIKFQRSV 62
Score = 39.1 bits (87), Expect = 0.002
Identities = 22/47 (46%), Positives = 29/47 (61%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRK QRE
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKTQRE 86
>SB_41736| Best HMM Match : Ribosomal_L24e (HMM E-Value=3.2e-07)
Length = 104
Score = 81.4 bits (192), Expect = 4e-16
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = -3
Query: 425 KTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAI 258
K F FLN +C+ A LMRRNPR VTWTVLYRR KKG +E+ +K RTRR KFQR++
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRRMHKKGTQEEVSKKRTRRNIKFQRSV 62
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 86
>SB_49067| Best HMM Match : Ribosomal_L24e (HMM E-Value=8.8e-07)
Length = 90
Score = 80.6 bits (190), Expect = 7e-16
Identities = 36/56 (64%), Positives = 43/56 (76%)
Frame = -3
Query: 425 KTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAI 258
K F FLN +C+ A LMRRNPR VTWTVLYR K KKG +E+ +K RTRR KFQR++
Sbjct: 7 KVFNFLNKRCERALLMRRNPREVTWTVLYRCKHKKGTQEEVSKKRTRRNIKFQRSV 62
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 40 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 86
>SB_12479| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 52
Score = 40.7 bits (91), Expect = 7e-04
Identities = 23/47 (48%), Positives = 30/47 (63%)
Frame = -2
Query: 327 QKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQRE 187
+KG + SK+ ++ K ASL +I+AKRN KPEVRKAQRE
Sbjct: 2 KKGTQEEVSKKRTRRNIKFQRSVQGASLDNILAKRNQKPEVRKAQRE 48
>SB_14467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 352
Score = 27.5 bits (58), Expect = 6.7
Identities = 21/59 (35%), Positives = 31/59 (52%)
Frame = -3
Query: 380 MRRNPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQKFQRAIVVLHLVTLWLSVI*SLKY 204
M+RNPR + WT + F+K +D A T +K +R + V + LW S SLK+
Sbjct: 1 MKRNPRKMKWT----KAFRKAAGKDLAIDSTFEFEK-KRNVPVKYNRELW-SNTESLKF 53
>SB_25467| Best HMM Match : Voltage_CLC (HMM E-Value=2.4e-10)
Length = 300
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = +3
Query: 273 LLGPSSTTLCLIFLWALFELAPVQDSPGYCTRIPPHQMG 389
L G S + +W LF L + S G+ + PH +G
Sbjct: 66 LFGLSDHVMVQYLVWVLFPLVLITFSVGFTHLVSPHAIG 104
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,894,092
Number of Sequences: 59808
Number of extensions: 252493
Number of successful extensions: 634
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -