Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10569
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S ...    75   4e-14
At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)            74   5e-14
At2g44860.1 68415.m05585 60S ribosomal protein L24, putative           62   2e-10
At1g55260.1 68414.m06312 protease inhibitor/seed storage/lipid t...    29   2.4  
At2g33580.1 68415.m04115 protein kinase family protein / peptido...    28   4.2  
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot...    27   7.3  
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi...    27   9.6  
At2g26470.1 68415.m03176 expressed protein contains PF02586: Unc...    27   9.6  
At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and gb...    27   9.6  
At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and gb...    27   9.6  

>At3g53020.1 68416.m05844 60S ribosomal protein L24 (RPL24B) 60S
           ribosomal protein L24, Arabidopsis thaliana,
           EMBL:AC006282
          Length = 163

 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = -3

Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
           +K  LC +SG KIYPG G   ++ D + F FLNSKC      +  P  + WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHK 62

Query: 323 KGPEEDQAKSRTRRTQK-FQRAIV 255
           K   ++  K R R T+K + R+IV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIV 86


>At2g36620.1 68415.m04490 60S ribosomal protein L24 (RPL24A)
          Length = 164

 Score = 74.1 bits (174), Expect = 5e-14
 Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
 Frame = -3

Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
           +K  LC +SG KIYPG G   ++ D + F FLNSKC      +  P  + WT +YR++ K
Sbjct: 3   LKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHK 62

Query: 323 KGPEEDQAKSRTRRTQK-FQRAIV 255
           K   ++  K R R T+K + R+IV
Sbjct: 63  KDAAQEAVKRRRRATKKPYSRSIV 86


>At2g44860.1 68415.m05585 60S ribosomal protein L24, putative
          Length = 159

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
 Frame = -3

Query: 503 MKLGLCAYSGYKIYPGHGKAMVKVDGKTFAFLNSKCDAAHLMRRNPRTVTWTVLYRRKFK 324
           M+L  C +    IYPGHG   V+ D K F F  SKC     M+RNPR V WT  +R    
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 323 KGPEED---QAKSRTRRTQKFQRAIVVLHLVTL-WLSVI*SLKYVKRRENR 183
           K   +D   + + +  R +++ R +    L+ +  ++ I + +  K  ENR
Sbjct: 61  KDMTKDTTFEFEKKRNRPERYDRNVTENTLMAIKKIAKIRTAREAKHIENR 111


>At1g55260.1 68414.m06312 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 184

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 282 DPKVPTCDCCASLGDIMAK 226
           D K PT DCCA  G ++ K
Sbjct: 50  DAKAPTKDCCAGFGQVIRK 68


>At2g33580.1 68415.m04115 protein kinase family protein /
           peptidoglycan-binding LysM domain-containing protein
           protein kinase [Arabidopsis thaliana] GI:2852449;
           contains Pfam profiles PF01476: LysM domain, PF00069:
           Protein kinase domain
          Length = 664

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 182 ACSLCALRTSGFILRLAIMSPSEAQQSHV 268
           AC+L AL  + F+L    +SP++AQQ +V
Sbjct: 3   ACTLHALSVTLFLLLFFAVSPAKAQQPYV 31


>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 571

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -3

Query: 371 NPRTVTWTVLYRRKFKKGPEEDQAKSRTRRTQ 276
           NP T+TW+  + RK   GP++     R +R +
Sbjct: 174 NPETITWSYTFNRKL-SGPDKIVEYHREKREE 204


>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile: PF01535 PPR repeat
          Length = 700

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 230 AIMSPSEAQQSHVGTFGSF*YDSLLDLPLGPF*TCACTGQSRLLYEDSSSSNG 388
           A++  +   QSH+ TF       LL+  +  +  C C   +R L+E+    +G
Sbjct: 75  ALVVQARKVQSHLVTFSPLPPIFLLNRAIEAYGKCGCVDDARELFEEMPERDG 127


>At2g26470.1 68415.m03176 expressed protein contains PF02586:
           Uncharacterized ACR, COG2135; weak similarity to NF-M
           protein (GI:205688) [Rattus norvegicus]
          Length = 487

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = -2

Query: 426 KNLRIPEFKM*RRPFDEEESSYSNLDCPVQAQVQKGPR--GRSSKESY*KD 280
           KNL   E      PF E+ S+ ++L  PV+  VQ+G +  G+S K    K+
Sbjct: 304 KNLEFQEIVK-AEPFVEDNSAVASLPEPVKNDVQEGTKEEGKSLKTGLTKE 353


>At1g15400.2 68414.m01845 expressed protein ESTs gb|H37295 and
           gb|R64895 come from this gene
          Length = 140

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 336 AQVQKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQR 190
           AQ      GR S       P++ +C CC++ G     + + P  R  +R
Sbjct: 89  AQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGKNPPGKKVNPRKRPPKR 137


>At1g15400.1 68414.m01844 expressed protein ESTs gb|H37295 and
           gb|R64895 come from this gene
          Length = 145

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = -2

Query: 336 AQVQKGPRGRSSKESY*KDPKVPTCDCCASLGDIMAKRNMKPEVRKAQR 190
           AQ      GR S       P++ +C CC++ G     + + P  R  +R
Sbjct: 89  AQRHHRTTGRVSPAVDPPSPRISSCGCCSAFGKNPPGKKVNPRKRPPKR 137


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,098,507
Number of Sequences: 28952
Number of extensions: 180795
Number of successful extensions: 431
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)