Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10568
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 109 2e-25
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 103 1e-23
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.87
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom... 27 1.1
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 3.5
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large... 25 4.6
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 25 4.6
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 6.1
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 25 8.1
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ... 25 8.1
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 8.1
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 25 8.1
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 8.1
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos... 25 8.1
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 109 bits (262), Expect = 2e-25
Identities = 53/75 (70%), Positives = 60/75 (80%)
Frame = +1
Query: 31 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 210
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK EIREKLA+MYK + V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59
Query: 211 FKTNFGGGKSTGFAL 255
+T+FGGG+STGFAL
Sbjct: 60 LRTHFGGGRSTGFAL 74
Score = 50.4 bits (115), Expect = 1e-07
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +3
Query: 255 IYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 392
IYD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 75 IYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 103 bits (248), Expect = 1e-23
Identities = 48/75 (64%), Positives = 58/75 (77%)
Frame = +1
Query: 31 MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 210
MSE TIRTRKFMTNRLL RKQMV D+LHPGK +SK ++REKL +MYK V FG
Sbjct: 1 MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59
Query: 211 FKTNFGGGKSTGFAL 255
+T++GGG++TGFAL
Sbjct: 60 LRTHYGGGRTTGFAL 74
Score = 50.4 bits (115), Expect = 1e-07
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Frame = +3
Query: 255 IYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 392
IYD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT
Sbjct: 75 IYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.87
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 282 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPAC22A12.11 |dak1||dihydroxyacetone kinase
Dak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 27.5 bits (58), Expect = 1.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 148 EIREKLAKMYKVTPDVVFVFGFKTNFGG 231
+++E LAK YK+ P +F F T+ G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 63 ASANSRCSFTHFELFSII 10
+S SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794
>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1405
Score = 25.4 bits (53), Expect = 4.6
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -2
Query: 263 VVDKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLL 138
++D + +DLPPP ++KP T +L +R S +L
Sbjct: 565 MMDASTHIDLPPPA-IIKPRCLWTGKQVFTVLMKPNRFSKVL 605
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 4.6
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 199 FVFGFKTNFGGGKSTG--FALSTTHSIW 276
F+FG TN+ G + G F LS T +W
Sbjct: 232 FIFGDFTNYSGWSNMGWAFILSFTTPVW 259
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 6.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 183 YSRCSVRIRFQDKLR-RWQVNWIRFIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKE 359
Y+R + +I D++R +W+ D+LD+ + RH + + P + RK
Sbjct: 365 YTRTAFQIPGDDEVRINLDSDWVMIREDSLDIERPCRDPEDWHRHDIDDADFPYKHLRKG 424
Query: 360 RKNR 371
+R
Sbjct: 425 EYSR 428
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +3
Query: 276 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1854
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 230 PPKFVLKPNTNTTSGVTLYILASFS 156
PPK LKP+ +T+ ++ Y LA S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 8.1
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +3
Query: 282 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 383
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 158 SRISVLLTVGFPGCKTSQTICLRANNL 78
SRI + ++G K Q++CLR N +
Sbjct: 48 SRIQSMASLGLERFKNLQSLCLRQNQI 74
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/23 (34%), Positives = 17/23 (73%)
Frame = +3
Query: 324 EKKRPTRKQRKERKNRMKKVRGT 392
E+ +P ++ +E +NR+ ++RGT
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGT 112
>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 591
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 39 RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 155
+NS++S + +Q + ADG R + + Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,995
Number of Sequences: 5004
Number of extensions: 38713
Number of successful extensions: 134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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