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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10568
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac...   109   2e-25
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...   103   1e-23
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S...    28   0.87 
SPAC22A12.11 |dak1||dihydroxyacetone kinase Dak1|Schizosaccharom...    27   1.1  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   3.5  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    25   4.6  
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc...    25   4.6  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    25   6.1  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   8.1  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   8.1  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    25   8.1  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   8.1  
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi...    25   8.1  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    25   8.1  

>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score =  109 bits (262), Expect = 2e-25
 Identities = 53/75 (70%), Positives = 60/75 (80%)
 Frame = +1

Query: 31  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 210
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK EIREKLA+MYK   + V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFG 59

Query: 211 FKTNFGGGKSTGFAL 255
            +T+FGGG+STGFAL
Sbjct: 60  LRTHFGGGRSTGFAL 74



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 IYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 392
           IYD+ +  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 75  IYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score =  103 bits (248), Expect = 1e-23
 Identities = 48/75 (64%), Positives = 58/75 (77%)
 Frame = +1

Query: 31  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFG 210
           MSE   TIRTRKFMTNRLL RKQMV D+LHPGK  +SK ++REKL +MYK     V  FG
Sbjct: 1   MSEAV-TIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFG 59

Query: 211 FKTNFGGGKSTGFAL 255
            +T++GGG++TGFAL
Sbjct: 60  LRTHYGGGRTTGFAL 74



 Score = 50.4 bits (115), Expect = 1e-07
 Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = +3

Query: 255 IYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGT 392
           IYD ++  KKFEP +RL R G  E  ++  R+QRK+RKNR KKV GT
Sbjct: 75  IYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGT 121


>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
           Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 624

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +3

Query: 282 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
           K+ P  R    G + +KR  RK++ E+KN   K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571


>SPAC22A12.11 |dak1||dihydroxyacetone kinase
           Dak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +1

Query: 148 EIREKLAKMYKVTPDVVFVFGFKTNFGG 231
           +++E LAK YK+ P  +F   F T+  G
Sbjct: 286 KVKEALAKEYKINPVRIFAGPFTTSLNG 313


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 63  ASANSRCSFTHFELFSII 10
           +S  SRCSFT FE+ SI+
Sbjct: 777 SSVISRCSFTDFEINSIL 794


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 263 VVDKANPVDLPPPKFVLKPNTNTTSGVTLYILASFSRISVLL 138
           ++D +  +DLPPP  ++KP    T      +L   +R S +L
Sbjct: 565 MMDASTHIDLPPPA-IIKPRCLWTGKQVFTVLMKPNRFSKVL 605


>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 550

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 199 FVFGFKTNFGGGKSTG--FALSTTHSIW 276
           F+FG  TN+ G  + G  F LS T  +W
Sbjct: 232 FIFGDFTNYSGWSNMGWAFILSFTTPVW 259


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +3

Query: 183 YSRCSVRIRFQDKLR-RWQVNWIRFIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKE 359
           Y+R + +I   D++R     +W+    D+LD+ +         RH + +   P +  RK 
Sbjct: 365 YTRTAFQIPGDDEVRINLDSDWVMIREDSLDIERPCRDPEDWHRHDIDDADFPYKHLRKG 424

Query: 360 RKNR 371
             +R
Sbjct: 425 EYSR 428


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +3

Query: 276 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
           +KK + +    +     +K   +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -2

Query: 230 PPKFVLKPNTNTTSGVTLYILASFS 156
           PPK  LKP+ +T+  ++ Y LA  S
Sbjct: 818 PPKEPLKPSLDTSPELSKYSLAKLS 842


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +3

Query: 282 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 383
           +F  KH L RHG  EKKR       R+Q   +  R KKV
Sbjct: 58  EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 158 SRISVLLTVGFPGCKTSQTICLRANNL 78
           SRI  + ++G    K  Q++CLR N +
Sbjct: 48  SRIQSMASLGLERFKNLQSLCLRQNQI 74


>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
           Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +3

Query: 324 EKKRPTRKQRKERKNRMKKVRGT 392
           E+ +P  ++ +E +NR+ ++RGT
Sbjct: 90  ERLKPQDERTQEERNRVDEIRGT 112


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 39  RNSDYSHSQVHDQQIVGAQADGLRCFTSRKTNRQQDRDP 155
           +NS++S +   +Q    + ADG R +   +   Q+ R+P
Sbjct: 449 KNSEFSETNAMNQTSNHSHADGQRYYRPEQDRSQRLRNP 487


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,995
Number of Sequences: 5004
Number of extensions: 38713
Number of successful extensions: 134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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