Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10568
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0550 - 30151494-30151526,30151620-30151706,30152458-301526... 104 3e-23
06_03_0440 + 20815528-20815653,20815742-20815912,20816501-208165... 101 4e-22
02_02_0153 - 7258002-7258034,7258137-7258223,7258991-7259161,725... 101 4e-22
04_01_0254 + 3388215-3388553,3388869-3390830 30 1.1
08_02_0672 - 19904353-19904839,19905646-19905704,19906137-199063... 29 1.5
01_06_1585 - 38448403-38448512,38448836-38448916,38449388-384494... 29 2.0
01_01_0502 - 3688940-3689149,3689180-3689251,3690028-3690064,369... 29 2.0
01_06_0733 - 31563246-31563462,31563721-31563947,31563983-315640... 29 2.6
01_06_0355 + 28657833-28660665,28660762-28661126 29 2.6
03_05_1122 + 30546314-30549277,30549615-30549693,30549857-305499... 28 3.5
01_06_1355 + 36610390-36610479,36611906-36612063,36612144-366125... 28 4.6
01_05_0740 - 24809951-24810394,24810622-24810700,24811651-248118... 27 6.1
06_03_0505 + 21545547-21545813,21546075-21546167,21546535-215467... 27 8.1
>01_06_0550 -
30151494-30151526,30151620-30151706,30152458-30152628,
30152716-30152757,30152856-30152939
Length = 138
Score = 104 bits (250), Expect = 3e-23
Identities = 47/70 (67%), Positives = 60/70 (85%), Gaps = 1/70 (1%)
Frame = +1
Query: 49 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 225
T+RTRKFMTNRLL+RKQ V +V+HPG+P VSK E++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHF 70
Query: 226 GGGKSTGFAL 255
GGGKSTGF L
Sbjct: 71 GGGKSTGFGL 80
Score = 66.1 bits (154), Expect = 1e-11
Identities = 30/45 (66%), Positives = 35/45 (77%)
Frame = +3
Query: 255 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 389
IYD LD AKK+EPK+RL R+GL K +RKQ KERKNR KK+RG
Sbjct: 81 IYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRG 125
>06_03_0440 +
20815528-20815653,20815742-20815912,20816501-20816584,
20818831-20818917,20819044-20819076
Length = 166
Score = 101 bits (241), Expect = 4e-22
Identities = 46/70 (65%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Frame = +1
Query: 49 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 225
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 226 GGGKSTGFAL 255
GGGKSTGF L
Sbjct: 71 GGGKSTGFGL 80
Score = 35.9 bits (79), Expect(2) = 3e-07
Identities = 16/26 (61%), Positives = 19/26 (73%)
Frame = +3
Query: 312 HGLYEKKRPTRKQRKERKNRMKKVRG 389
+GL K +RKQ KERKNR KK+RG
Sbjct: 128 NGLATKVEKSRKQMKERKNRAKKIRG 153
Score = 35.5 bits (78), Expect(2) = 3e-07
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = +3
Query: 186 SRCSVRIRFQDKLRRWQVNWIRFIYDTLDLAKKFEPKHRLAR 311
S C +F+ + IYD LD AKK+EPK+RL R
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIR 99
>02_02_0153 -
7258002-7258034,7258137-7258223,7258991-7259161,
7259261-7259386
Length = 138
Score = 101 bits (241), Expect = 4e-22
Identities = 46/70 (65%), Positives = 59/70 (84%), Gaps = 1/70 (1%)
Frame = +1
Query: 49 TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVFGFKTNF 225
T+RTRKFMTNRLL+RKQ V +VLHPG+ VSK +++EKLAK+Y+V + +FVF F+T+F
Sbjct: 11 TLRTRKFMTNRLLSRKQFVLEVLHPGRANVSKADLKEKLAKLYEVKDSNCIFVFKFRTHF 70
Query: 226 GGGKSTGFAL 255
GGGKSTGF L
Sbjct: 71 GGGKSTGFGL 80
Score = 67.3 bits (157), Expect = 6e-12
Identities = 33/68 (48%), Positives = 41/68 (60%)
Frame = +3
Query: 186 SRCSVRIRFQDKLRRWQVNWIRFIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 365
S C +F+ + IYD LD AKK+EPK+RL R+GL K +RKQ KERK
Sbjct: 58 SNCIFVFKFRTHFGGGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERK 117
Query: 366 NRMKKVRG 389
NR KK+RG
Sbjct: 118 NRAKKIRG 125
>04_01_0254 + 3388215-3388553,3388869-3390830
Length = 766
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +3
Query: 243 WIRFIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
WI + +AK FE + + G E R +RK+ +++K M++
Sbjct: 137 WISSFVCLMAIAKYFEGAYYALQRGNLENMRSSRKEEEKKKENMRR 182
>08_02_0672 - 19904353-19904839,19905646-19905704,19906137-19906352,
19906845-19907422,19907506-19908180,19908263-19908653,
19909469-19909621,19909727-19909980,19911023-19911479
Length = 1089
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +3
Query: 39 RNSDYSHSQVHDQ--QIVGAQADGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRF 212
R+SD ++ + D+ Q VG +D R T + +QD+ E + + + R
Sbjct: 761 RSSDRTNQRDRDRNDQDVGRTSDERREKTHDREKDKQDKPKSENKNILDAKQLIDMIPRT 820
Query: 213 QDKLRRWQVNWIRFIYDTLDLAKKFEP 293
+++L + +NW IYD +L ++ P
Sbjct: 821 KEELFAYDINWA--IYDKHELHERMRP 845
>01_06_1585 -
38448403-38448512,38448836-38448916,38449388-38449475,
38449571-38449666,38449823-38449879,38449960-38450466,
38450701-38451393,38451612-38451683
Length = 567
Score = 29.1 bits (62), Expect = 2.0
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = +2
Query: 215 RQTSEVASQLDSLYLRHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNE-EGPR 388
R+ S +SQ S+ RH + + ++ A VS PR E H T R +Q + + PR
Sbjct: 305 RRPSSASSQRPSVGERHRIARESIKKPADVSTPRRPSTAERHPVTTERARKQADVDTPR 363
>01_01_0502 -
3688940-3689149,3689180-3689251,3690028-3690064,
3691224-3691705
Length = 266
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 248 SLYLRHTRSGQEVRAQAQVSPPRPVREEEAHA 343
S +R + G E AQ+ PPRPV + +HA
Sbjct: 156 SRLVRTSEHGDEQLTGAQLRPPRPVEADASHA 187
>01_06_0733 -
31563246-31563462,31563721-31563947,31563983-31564018,
31564750-31564862,31565872-31565950,31566739-31566956,
31567041-31567146,31568518-31568730
Length = 402
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 239 QLDSLYLRHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT 361
+L S+ H RSG++ R + ++SP P R+ + R+
Sbjct: 182 ELSSVNSMHQRSGEDFRQEHEISPVAPHRDVRVYVDNVVRS 222
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -2
Query: 209 PNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 30
PN S +TL L + + L +GFP CK + + + LL ++V +PS++
Sbjct: 670 PNGGVFSNITLQSLRGNTALCGLPRLGFPHCKNDHPLQGKKSRLL------KVVLIPSIL 723
>03_05_1122 +
30546314-30549277,30549615-30549693,30549857-30549945,
30550422-30550538,30550873-30551111,30552279-30552365,
30552732-30552831,30553319-30553532,30553617-30553777
Length = 1349
Score = 28.3 bits (60), Expect = 3.5
Identities = 25/102 (24%), Positives = 46/102 (45%)
Frame = +3
Query: 81 IVGAQADGLRCFTSRKTNRQQDRDP*EARQNVQGYSRCSVRIRFQDKLRRWQVNWIRFIY 260
+ A A L S K R +D+ P ++++V + V KL+R VN R
Sbjct: 720 VTKAYAVFLEGMESEKKGRAKDQRP--SKKSVGSPGKSHVSEEILSKLKRIVVNKRRTKV 777
Query: 261 DTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 386
+ L K+ +HGL +K++ +++ + KN++ R
Sbjct: 778 ELQKLKKR--------KHGLLKKQKTSKRNSRGSKNKISNSR 811
>01_06_1355 +
36610390-36610479,36611906-36612063,36612144-36612523,
36612600-36613583,36614228-36614292,36614946-36615024,
36615480-36615529,36616595-36616781,36617922-36617957,
36619226-36619348,36619466-36620386,36620506-36620636
Length = 1067
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/43 (27%), Positives = 25/43 (58%)
Frame = -2
Query: 158 SRISVLLTVGFPGCKTSQTICLRANNLLVMNLRVRIVAVPSLI 30
+R+ V + +GF C+ QT C R+ +++ N+ A+P+ +
Sbjct: 364 TRMLVTVGLGFSSCQPEQTQCNRSAPVVLANMNNVSFALPNTV 406
>01_05_0740 - 24809951-24810394,24810622-24810700,24811651-24811809,
24812083-24812246,24812436-24812624,24813151-24813408,
24813463-24813951,24814062-24814262,24814368-24814639,
24814661-24814685,24814776-24814937,24815065-24815104,
24815244-24815353,24815812-24815898,24816013-24816507
Length = 1057
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +3
Query: 315 GLYEKKRPTRKQRKERKNRMKK 380
G+YE++R R+Q KER+ + K
Sbjct: 999 GVYERERNMRQQEKERRKQQSK 1020
>06_03_0505 +
21545547-21545813,21546075-21546167,21546535-21546747,
21548933-21549124,21549217-21550197
Length = 581
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -2
Query: 302 PVLGLELLGQIECVVDKANPVDLPPPKF-VLKP--NTNTTSGVTLYILASFSRISVLL 138
P LG +G + A P D + V++P N NTT G +Y+LA + + V+L
Sbjct: 400 PYLGSLKMGLRSALPSAARPSDTFGRGYDVMRPPANPNTTVGDNVYVLAHNATVDVVL 457
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,937,688
Number of Sequences: 37544
Number of extensions: 267752
Number of successful extensions: 867
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 831
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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