Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10568
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)                       30   1.2  
SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)              29   1.6  
SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)                  29   2.1  
SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)                     29   2.1  
SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)                      29   2.1  
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.6  
SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)                   28   4.7  
SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   4.7  
SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            27   6.3  
SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 27   8.3  

>SB_51534| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 795

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -2

Query: 266 CVVDKANPVDLPPPKF-VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLR 90
           C  D  + ++ PPPKF +     ++T  V L +L  F  + V++           T C  
Sbjct: 6   CCNDSNSSINSPPPKFSITTIAVSSTFVVILLLLTVFGNVLVIMAFKVFHRMRQVTNCFV 65

Query: 89  ANNLLVMNLRVRIVAVP 39
           A +L V ++ V + A+P
Sbjct: 66  A-SLAVTDILVAVFAMP 81


>SB_11523| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 195 YIGSNLVHFGELLTDLGLADGWFSWM*NIANHLLARQQSVGHELASANS 49
           +I  N  +F   + DLG+A  +   +  + +H L R Q+VGH  A   S
Sbjct: 289 FIDFNDFYFSNRVVDLGIALAYIMMLPQVNSH-LTRPQAVGHMFAGYQS 336


>SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
          Length = 902

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 195 SVRIRFQDKLRRWQVNWIRFIYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERK 365
           SVR    D +R  QVN +R + D +   +K   K   + H LY + R    QR++++
Sbjct: 769 SVR-HLDDNVRHLQVN-VRHLDDNVRHLQKIVSKLEESEHALYNRVRAAEMQRRKQE 823


>SB_18070| Best HMM Match : V-ATPase_G (HMM E-Value=4)
          Length = 166

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 294 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 386
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 79  RHGLASHDKKKRERPSLVARERMKKRLRKIR 109


>SB_44985| Best HMM Match : YhjQ (HMM E-Value=0.37)
          Length = 1376

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 267  LDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKV 383
            LDL      KHR  RH   EKK    K RK +KN M+++
Sbjct: 1000 LDLLLAHATKHRGRRHRS-EKKEKANKARKCQKNYMRRL 1037


>SB_6351| Best HMM Match : IncA (HMM E-Value=0.13)
          Length = 417

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 294 KHRLARHGLYEKKRPTRKQRKERKNRMKKVR 386
           +H LA H   +++RP+   R+  K R++K+R
Sbjct: 378 RHGLASHDKKKRERPSLVARERMKKRLRKIR 408


>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6406

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = +2

Query: 227  EVASQLDSLYLRHTRSGQEVRAQAQVSPPRPVREEEAHAQTA 352
            E  SQL+ +  +  ++GQ +   ++  P R V E++ H  TA
Sbjct: 2394 EAVSQLEPVIAQLLKTGQAILDSSEHGPDRDVLEQKLHDTTA 2435


>SB_43681| Best HMM Match : MAM (HMM E-Value=2.5e-20)
          Length = 1468

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 221  FVLKPNTNTTSGVTL---YILASFSRISVLLTVGFPGCKTSQT 102
            F+  PN   ++  TL    ++ S  R+ V+ +VG PGC  S T
Sbjct: 904  FISIPNITISNTFTLSWWMLVQSVQRVYVMTSVGNPGCGASPT 946


>SB_24027| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 1074

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 171 FGELLTDLGLADGWFSWM*NIANHLLA 91
           FGEL+ D G +   F+W+ N++N +LA
Sbjct: 76  FGELMLDAGWSRNAFNWL-NMSNSMLA 101


>SB_16395| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +3

Query: 291 PKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
           P+  L  H L ++ R  R+QR ER++R+K+
Sbjct: 21  PQQILFTHRLEQRYRVERRQRLERRHRVKR 50


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = -2

Query: 218 VLKPNTNTTSGVTLYILASFSRISVLLTVGFPGCKTSQTICLRANNLLVM 69
           V+  NT  ++ +T     +F  I +++T     C++S TI +  NN + +
Sbjct: 137 VIINNTIISTKITTSTTTTFIIIIIIITTSSHHCRSSTTIVVTTNNTITI 186


>SB_19567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1383

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 79   RLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKT--NFGGGKSTGFA 252
            ++++ K+   +    G  T+ K  +   + K+ K+T     + GF    +FGGG  +GFA
Sbjct: 1002 QMISGKEDAANNYARGHYTIGKEMVEVVMDKIRKMTDQCSGLQGFLIFHSFGGGTGSGFA 1061

Query: 253  -LSTTH 267
             L T H
Sbjct: 1062 SLITEH 1067


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +3

Query: 282  KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 386
            KFEPKH+  +     KKR +RK+  E + + + +R
Sbjct: 1060 KFEPKHK-KKGRSSSKKRHSRKKGHEEQQKKETIR 1093


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,890
Number of Sequences: 59808
Number of extensions: 298283
Number of successful extensions: 925
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)