Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10568
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal pro...   106   7e-24
Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical pr...    42   2e-04
AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical ...    33   0.084
AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical...    29   2.4  
AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical ...    28   3.2  
AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical ...    28   3.2  
U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine rece...    28   4.2  
Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical p...    27   7.3  
Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical pr...    27   7.3  
U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine rece...    27   7.3  
Z83111-2|CAB05533.2|  331|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine rece...    27   9.7  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF036706-2|ABD94090.1|  131|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 24 protein.
          Length = 131

 Score =  106 bits (255), Expect = 7e-24
 Identities = 47/69 (68%), Positives = 57/69 (82%)
 Frame = +1

Query: 49  TIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFG 228
           TIRTRK +TN+LL RKQMV +V+HPG+PTV K +IREK+AK+YK TPD V  FGF++  G
Sbjct: 6   TIRTRKVLTNKLLYRKQMVVEVIHPGRPTVPKADIREKIAKLYKTTPDTVIPFGFESKIG 65

Query: 229 GGKSTGFAL 255
           GGKS GFAL
Sbjct: 66  GGKSKGFAL 74



 Score = 74.5 bits (175), Expect = 4e-14
 Identities = 36/62 (58%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
 Frame = +3

Query: 210 FQDKLRRWQVNWIRFIYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVR 386
           F+ K+   +      +YDT+D AKKFEPK+RL R GL  K ++P RKQRKERKNR KKVR
Sbjct: 60  FESKIGGGKSKGFALVYDTIDFAKKFEPKYRLVRMGLATKVEKPGRKQRKERKNRQKKVR 119

Query: 387 GT 392
           GT
Sbjct: 120 GT 121


>Z29115-2|CAA82363.1|   91|Caenorhabditis elegans Hypothetical
           protein T26G10.3 protein.
          Length = 91

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 16/33 (48%), Positives = 23/33 (69%)
 Frame = +1

Query: 100 MVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVV 198
           MV +V+ PG+PT  K +IREK+A  Y + PD +
Sbjct: 1   MVAEVILPGRPTTLKADIREKIANFYNINPDTM 33


>AF036706-3|ABD94091.1|  204|Caenorhabditis elegans Hypothetical
           protein T07A9.14 protein.
          Length = 204

 Score = 33.5 bits (73), Expect = 0.084
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 255 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNR 371
           +YDT D A K++P+H  + H      R +  +RKE++ R
Sbjct: 58  VYDTFDFANKYQPEHS-SNHDGASTSRTSISRRKEKRRR 95


>AL132876-23|CAD92403.1|  210|Caenorhabditis elegans Hypothetical
           protein Y105E8A.28 protein.
          Length = 210

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/57 (31%), Positives = 27/57 (47%)
 Frame = +2

Query: 215 RQTSEVASQLDSLYLRHTRSGQEVRAQAQVSPPRPVREEEAHAQTA*RT*EQNEEGP 385
           RQ S++ ++   ++LR+       R +  V PP+   E E  A  A    EQN  GP
Sbjct: 13  RQLSDLLAEAIGIHLRNEELH---RFRQAVPPPQQAEEAEEEADVAENVVEQNRLGP 66


>AF039053-9|AAN84838.1|  131|Caenorhabditis elegans Hypothetical
           protein C45H4.14b protein.
          Length = 131

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 17  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 57


>AF039053-8|AAC25878.1|  178|Caenorhabditis elegans Hypothetical
           protein C45H4.14a protein.
          Length = 178

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 255 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 380
           I   LD  KK E KHR A+     +K+  ++Q K+ K  +KK
Sbjct: 64  ILKKLDEKKKTEEKHR-AKQERQAQKKGAKEQAKKEKAELKK 104


>U55366-7|AAA97985.2|  323|Caenorhabditis elegans Serpentine
           receptor, class x protein74 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
 Frame = -2

Query: 161 FSRISVLLTV-GFPGCKTSQTICL-RA-NNLLVMNLRVRIVAVPSLILNY 21
           FS + V L V GF    +   ICL RA NN++V+ +   I   P+L+L+Y
Sbjct: 22  FSSLIVYLYVSGFAEKTSFNVICLVRAVNNIIVLVVNFLIFLFPTLLLSY 71


>Z69904-9|CAH60797.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324 EKKRPTRKQRKERKNRMKKVR 386
           E+KR  +K+R ERK   +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840


>Z69904-8|CAD57719.1| 2392|Caenorhabditis elegans Hypothetical protein
            F07A11.6c protein.
          Length = 2392

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324  EKKRPTRKQRKERKNRMKKVR 386
            E+KR  +K+R ERK   +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131


>Z69904-7|CAB54502.2| 2407|Caenorhabditis elegans Hypothetical protein
            F07A11.6b protein.
          Length = 2407

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324  EKKRPTRKQRKERKNRMKKVR 386
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z69904-6|CAB54501.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324  EKKRPTRKQRKERKNRMKKVR 386
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z66511-12|CAH60796.1| 2101|Caenorhabditis elegans Hypothetical
           protein F07A11.6e protein.
          Length = 2101

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324 EKKRPTRKQRKERKNRMKKVR 386
           E+KR  +K+R ERK   +KVR
Sbjct: 820 ERKREKKKERDERKKEKEKVR 840


>Z66511-11|CAD57694.1| 2392|Caenorhabditis elegans Hypothetical
            protein F07A11.6c protein.
          Length = 2392

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324  EKKRPTRKQRKERKNRMKKVR 386
            E+KR  +K+R ERK   +KVR
Sbjct: 1111 ERKREKKKERDERKKEKEKVR 1131


>Z66511-10|CAB54211.2| 2407|Caenorhabditis elegans Hypothetical
            protein F07A11.6b protein.
          Length = 2407

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324  EKKRPTRKQRKERKNRMKKVR 386
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>Z66511-9|CAB54210.3| 2211|Caenorhabditis elegans Hypothetical protein
            F07A11.6a protein.
          Length = 2211

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +3

Query: 324  EKKRPTRKQRKERKNRMKKVR 386
            E+KR  +K+R ERK   +KVR
Sbjct: 1126 ERKREKKKERDERKKEKEKVR 1146


>U55366-8|AAZ91347.1|  287|Caenorhabditis elegans Serpentine
           receptor, class x protein73 protein.
          Length = 287

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
 Frame = -2

Query: 116 KTS-QTICL-RA-NNLLVMNLRVRIVAVPSLILNY 21
           KTS   ICL RA NN++V+     ++  PSL+L+Y
Sbjct: 4   KTSFNVICLTRAVNNIIVLVFNFLVITFPSLLLSY 38


>Z83111-2|CAB05533.2|  331|Caenorhabditis elegans Hypothetical
           protein F57G8.3 protein.
          Length = 331

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 380 LLHSVLTFFTLFARGPLLLVQAVAG*PVLGLELLG 276
           L+ + + FFT F   P+L++   AG P+  L +LG
Sbjct: 57  LVGAFVDFFTSFLTAPVLILPVCAGYPLGVLGMLG 91


>U64841-1|AAB04845.2|  357|Caenorhabditis elegans Serpentine
           receptor, class t protein13 protein.
          Length = 357

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 378 SSFCSYVLYAVCAWASSSRTGRGGLTC 298
           +SFC+Y L+  CA +    +  GG  C
Sbjct: 99  ASFCNYPLFVFCAGSIGLGSWMGGCVC 125


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 114 NIANHLLARQQSVGHELASANSRCSFTHFELFSI 13
           N  NH+L++ + V H ++ ANSR +    E+ +I
Sbjct: 784 NEENHILSQTRPVSHPVSRANSRPTTPGLEIKTI 817


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,792,407
Number of Sequences: 27780
Number of extensions: 222629
Number of successful extensions: 794
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)