Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10568
         (489 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.0  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.0  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.0  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   9.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 220 NFGGGKSTGFALSTTHSIW 276
           NF   K  GF + TT  IW
Sbjct: 701 NFNESKFIGFTMYTTCIIW 719


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +1

Query: 220 NFGGGKSTGFALSTTHSIW 276
           NF   K  GF + TT  IW
Sbjct: 791 NFNESKFIGFTMYTTCIIW 809


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.0 bits (42), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 197 CSYSVSRQTSEVASQLDSLYL 259
           C YS+ R   +   Q D+LY+
Sbjct: 17  CYYSLKRHFQDKHEQSDTLYV 37


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 112 VLHPGKPTVSKTEIREK 162
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +1

Query: 112 VLHPGKPTVSKTEIREK 162
           +LHP + T  K   REK
Sbjct: 15  LLHPSRCTQGKVNYREK 31


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +3

Query: 24  IQNE*RNSDYSHS 62
           I++E  NSDYSH+
Sbjct: 224 IKHESDNSDYSHT 236


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,623
Number of Sequences: 438
Number of extensions: 2893
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)