Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10568
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi...   110   6e-25
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ...   106   9e-24
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s...    28   2.9  
At5g26850.1 68418.m03203 expressed protein                             28   3.9  
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica...    28   3.9  
At1g43730.1 68414.m05028 hypothetical protein                          27   5.1  
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf...    27   9.0  
At3g16350.1 68416.m02068 myb family transcription factor ; conta...    27   9.0  
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ...    27   9.0  

>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
           to ribosomal protein S19 GB:445612 [Solanum tuberosum]
           and similar to ribosomal protein S24 GB:4506703 [Homo
           sapiens]
          Length = 133

 Score =  110 bits (264), Expect = 6e-25
 Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 207
           M+E   TIRTRKFMTNRLL+RKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +FVF
Sbjct: 1   MAEKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVF 60

Query: 208 GFKTNFGGGKSTGFAL 255
            F+T+FGGGKS+GF L
Sbjct: 61  KFRTHFGGGKSSGFGL 76



 Score = 64.5 bits (150), Expect = 4e-11
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = +3

Query: 255 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 389
           IYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 77  IYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRG 121


>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
           ribosomal protein S19, Cyanophora paradoxa,
           EMBL:CPA245654
          Length = 133

 Score =  106 bits (254), Expect = 9e-24
 Identities = 49/76 (64%), Positives = 61/76 (80%), Gaps = 1/76 (1%)
 Frame = +1

Query: 31  MSEGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKV-TPDVVFVF 207
           M+E   TIRTR FMTNRLLARKQ V DVLHPG+  VSK E++EKLA+MY+V  P+ +F F
Sbjct: 1   MAEKAVTIRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCF 60

Query: 208 GFKTNFGGGKSTGFAL 255
            F+T+FGGGKS+G+ L
Sbjct: 61  KFRTHFGGGKSSGYGL 76



 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 30/45 (66%), Positives = 36/45 (80%)
 Frame = +3

Query: 255 IYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRG 389
           IYDT++ AKKFEPK+RL R+GL  K   +RKQ KERKNR KK+RG
Sbjct: 77  IYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRG 121


>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
           similarity to flagelliform silk protein [Nephila
           clavipes] gi|7106224|gb|AAF36090
          Length = 1504

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 190 DVVFVFGFKTNFGGGKSTGFAL 255
           DV FV GF T+F  G   GFA+
Sbjct: 251 DVGFVVGFVTSFAAGLDVGFAI 272


>At5g26850.1 68418.m03203 expressed protein
          Length = 919

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = +1

Query: 70  MTNRLLARKQMVCDVLHPGKPTVSKTEIRE-KLAKMYKVTPDVVFVFGFKTN 222
           M +++     ++ D++    P +SK E  + K+  + + TPD  F+FG + N
Sbjct: 702 MRSKVELSNTIITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753


>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to RUSH-1alpha [Oryctolagus cuniculus]
           GI:1655930; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1226

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 234 QVNWIRFIYDTLDLAKKFEPKHRLARHGLYEKKR 335
           QV+W R + D     K ++ +  +A  GL+ K+R
Sbjct: 711 QVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRR 744


>At1g43730.1 68414.m05028 hypothetical protein
          Length = 320

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 328 FSYRPWRA-NLCLGSNFLARSSVS*IKRIQLTCHLRSLS*NRIRTLHRE*P 179
           + Y  WR  NLCL +  +AR   S +K IQLT   R    +RI  LH   P
Sbjct: 259 YVYAIWRERNLCLHTG-VARVFDSVLKDIQLTIRARLDPISRITELHPSAP 308


>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
           domain PF03479: Domain of unknown function (DUF296),
           found in AT-hook motifs Pfam:PF02178
          Length = 419

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 263 VVDKANPVDLPPPKFVLKPNTNTTSG 186
           VV +  PV  PP  F  +P+TNT  G
Sbjct: 345 VVIQPPPVSAPPVSFSHEPSTNTVHG 370


>At3g16350.1 68416.m02068 myb family transcription factor ; contains
           Pfam profile: PF00249 Myb-like DNA-binding domain
          Length = 387

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 200 SYSVSRQTSEVASQLDSLYLRHTRSGQEVR 289
           +Y  SR  ++VAS     ++RHT S +  R
Sbjct: 165 NYVTSRTPTQVASHAQKYFIRHTSSSRRKR 194


>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
           ribosomal protein L2 [Gossypium arboreum] GI:17933133;
           contains Pfam profile PF00181: Ribosomal Proteins L2,
           RNA binding domain
          Length = 307

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -2

Query: 254 KANPVD-LPPPKFVLKPNTNTTSGV 183
           K N ++   PP+ +L+P TNT SG+
Sbjct: 82  KMNTIEKFAPPRKILEPTTNTISGL 106


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,179,885
Number of Sequences: 28952
Number of extensions: 208408
Number of successful extensions: 651
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)