Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10567X
         (405 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    26   0.16 
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   0.86 
AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax prot...    23   0.86 
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   6.1  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    20   8.0  

>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.8 bits (54), Expect = 0.16
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 186 PDVVFVFGFKTNFGGGKSTGFALSTT 263
           PD VF+  F+T+F  GK +G   + T
Sbjct: 107 PDDVFIRKFETSFESGKPSGVISTNT 132


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +2

Query: 257 YDTLDLAKKFEPKHRLAR-------HGLYEKKRPTRKQRKERKNRMKK 379
           Y TL+L K+F   H L R       H L   +R  +   + R+ ++KK
Sbjct: 233 YQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 280


>AF146649-1|AAD38009.1|   96|Tribolium castaneum ultrathorax
           protein.
          Length = 96

 Score = 23.4 bits (48), Expect = 0.86
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +2

Query: 257 YDTLDLAKKFEPKHRLAR-------HGLYEKKRPTRKQRKERKNRMKK 379
           Y TL+L K+F   H L R       H L   +R  +   + R+ ++KK
Sbjct: 15  YQTLELEKEFHTNHYLTRRRRIEMAHALCLTERQIKIWFQNRRMKLKK 62


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/22 (31%), Positives = 15/22 (68%)
 Frame = +2

Query: 182 YSRCSVRIRFQDKLRRWQVNWI 247
           Y+   +R++FQ KL   +++W+
Sbjct: 341 YASNCLRVQFQKKLLLVELSWM 362


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = +2

Query: 227 RWQVNWIRFVYDTLDLAKKFEPKHRLARH 313
           RW      FV + L   K+F     L RH
Sbjct: 337 RWHTGERPFVCNWLFCGKRFTRSDELQRH 365


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,499
Number of Sequences: 336
Number of extensions: 2034
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8752267
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)