Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10567X
(405 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein S24|Schizosac... 75 6e-15
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc... 71 7e-14
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 28 0.63
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 28 0.63
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat... 26 2.6
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 25 3.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 25 3.4
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 25 3.4
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 4.5
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom... 25 4.5
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 25 5.9
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac... 25 5.9
SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 25 5.9
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 25 5.9
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 24 7.8
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc... 24 7.8
>SPBC17G9.07 |rps2402|rps24-2|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 134
Score = 74.5 bits (175), Expect = 6e-15
Identities = 32/59 (54%), Positives = 45/59 (76%)
Frame = +3
Query: 78 QIVGAQQMVCEVLHPGKPTVSKTEIRDKLDKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 254
+++ +QMV ++LHPGK +SK EIR+KL +MYK + V FG +T+FGGG+STGFAL
Sbjct: 16 RLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRSTGFAL 74
Score = 51.2 bits (117), Expect = 6e-08
Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +2
Query: 254 VYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGTKK 397
+YD+ + KKFEP +RL R G E ++ R+QRK+RKNR KKV GT K
Sbjct: 75 IYDSTESMKKFEPHYRLVRVGQAEPIQKVARQQRKQRKNRGKKVFGTGK 123
Score = 33.1 bits (72), Expect = 0.017
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +1
Query: 31 MSEGRATIRTRKFMTNRLLARNR 99
MSE TIRTRKFMTNRLL R +
Sbjct: 1 MSEA-VTIRTRKFMTNRLLQRKQ 22
>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 134
Score = 70.9 bits (166), Expect = 7e-14
Identities = 28/59 (47%), Positives = 44/59 (74%)
Frame = +3
Query: 78 QIVGAQQMVCEVLHPGKPTVSKTEIRDKLDKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 254
+++ +QMV ++LHPGK +SK ++R+KL +MYK V FG +T++GGG++TGFAL
Sbjct: 16 RLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRTTGFAL 74
Score = 51.2 bits (117), Expect = 6e-08
Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Frame = +2
Query: 254 VYDTLDLAKKFEPKHRLARHGLYEK-KRPTRKQRKERKNRMKKVRGTKK 397
+YD ++ KKFEP +RL R G E ++ R+QRK+RKNR KKV GT K
Sbjct: 75 IYDDVEAMKKFEPHYRLVRVGHAEPIQKVARQQRKQRKNRGKKVFGTGK 123
Score = 33.1 bits (72), Expect = 0.017
Identities = 17/23 (73%), Positives = 18/23 (78%)
Frame = +1
Query: 31 MSEGRATIRTRKFMTNRLLARNR 99
MSE TIRTRKFMTNRLL R +
Sbjct: 1 MSEA-VTIRTRKFMTNRLLQRKQ 22
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.9 bits (59), Expect = 0.63
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +2
Query: 269 DLAKKFEPKHRLARHGLYEKKRPTR--KQRKERKNRMKKVRGTKKSK 403
D KK + +L ++KR R + +K K+ +KKV GTKK K
Sbjct: 155 DKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLKKVSGTKKVK 201
Score = 24.6 bits (51), Expect = 5.9
Identities = 9/35 (25%), Positives = 21/35 (60%)
Frame = +2
Query: 275 AKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 379
+KK + + + +K +K++KE+K+++KK
Sbjct: 125 SKKVKVRKTSGKESSKREKSKKKKEKKEKKDKLKK 159
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 27.9 bits (59), Expect = 0.63
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 281 KFEPKHRLARHGLYEKKRPTRKQRKERKNRMKK 379
K+ P R G + +KR RK++ E+KN K
Sbjct: 539 KYRPNARKPLVGRHREKRQLRKEKPEKKNNSTK 571
>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
phosphatidyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.6
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 127 NQPSARPRSVTSSTKCTRLLPM*CSYSVSRQTSEVASQLDSLCLRHTRSGQEVRAQ 294
N PS + +CTR P CS S+ Q + + L HT + + +R Q
Sbjct: 79 NNPSLHVHILADQLRCTRESPGCCSASLLMQLKKKFPDRCEIKLYHTPNLRGLRKQ 134
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 323 EKKRPTRKQRKERKNRMKKVRGTKKS 400
E+ +P ++ +E +NR+ ++RGT S
Sbjct: 90 ERLKPQDERTQEERNRVDEIRGTPMS 115
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/26 (34%), Positives = 18/26 (69%)
Frame = +2
Query: 326 KKRPTRKQRKERKNRMKKVRGTKKSK 403
+K+ +K++KE+K + +K KKS+
Sbjct: 449 RKKEAKKEKKEKKEKKEKKEKKKKSE 474
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 3.4
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +3
Query: 198 FVFGFKTNFGGGKSTG--FALSTTHSIW 275
F+FG TN+ G + G F LS T +W
Sbjct: 232 FIFGDFTNYSGWSNMGWAFILSFTTPVW 259
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.0 bits (52), Expect = 4.5
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -2
Query: 233 ATSEVCLETEYEHYIGSNLVHFVELVTDL 147
A SE LE EYE +GS L +E T +
Sbjct: 1297 AASENILEIEYEDEVGSGLGPTLEFYTSV 1325
>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 734
Score = 25.0 bits (52), Expect = 4.5
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +2
Query: 182 YSRCSVRIRFQDKLR-RWQVNWIRFVYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKE 358
Y+R + +I D++R +W+ D+LD+ + RH + + P + RK
Sbjct: 365 YTRTAFQIPGDDEVRINLDSDWVMIREDSLDIERPCRDPEDWHRHDIDDADFPYKHLRKG 424
Query: 359 RKNR 370
+R
Sbjct: 425 EYSR 428
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 24.6 bits (51), Expect = 5.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 281 KFEPKHRLARHGLYEKKRPT-----RKQRKERKNRMKKV 382
+F KH L RHG EKKR R+Q + R KKV
Sbjct: 58 EFGTKH-LRRHGRIEKKRRNWKGLFRRQSNWKDGRCKKV 95
>SPCC132.02 |hst2||Sir2 family histone deacetylase
Hst2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 332
Score = 24.6 bits (51), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 215 DKLRRWQVNWIRFVYDTLDLAKKFEPKHRLARHGLYEKKRPT 340
+ L+R+ + + V+D K P + LA + EK RPT
Sbjct: 56 NNLQRFNLPYAEAVFDLSYFRKNPRPFYELAHELMPEKYRPT 97
>SPCC1494.09c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 157
Score = 24.6 bits (51), Expect = 5.9
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 220 TSEVASQLDSLCLRHTRSG 276
T +V S LDSLCLR +SG
Sbjct: 91 TFKVFSLLDSLCLRLIQSG 109
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 24.6 bits (51), Expect = 5.9
Identities = 14/64 (21%), Positives = 29/64 (45%)
Frame = +1
Query: 130 QPSARPRSVTSSTKCTRLLPM*CSYSVSRQTSEVASQLDSLCLRHTRSGQEVRAQAQVSP 309
Q S+ +TSSTK T+ + + + S + + QL + E++ + + +
Sbjct: 352 QKSSEQTKITSSTKITKAIGLNTKSNDSSKKDNTSFQLHQVLNSIEIPKVEIKQEVEYAT 411
Query: 310 PRPV 321
P P+
Sbjct: 412 PSPL 415
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.2 bits (50), Expect = 7.8
Identities = 11/34 (32%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 55 RTRKFMTNRLLAR--NRWFAKFYIQENQPSARPR 150
+TR+ + N +A+ R+ FY+ E+ P A+P+
Sbjct: 4 QTREGLPNGWVAQWDERYKCYFYVNESDPKAKPQ 37
>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 732
Score = 24.2 bits (50), Expect = 7.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -1
Query: 234 CHLRSLS*NRIRTLHRE*PCTFCR 163
CH+ +L R+R L++ CTFC+
Sbjct: 101 CHVCAL---RLRALYKTKECTFCK 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,707,066
Number of Sequences: 5004
Number of extensions: 33145
Number of successful extensions: 138
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 138190552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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