Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10567X
(405 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) simi... 73 7e-14
At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S ... 70 5e-13
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 29 0.89
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 28 2.1
At5g09230.6 68418.m01054 transcriptional regulator Sir2 family p... 28 2.7
At5g09230.4 68418.m01053 transcriptional regulator Sir2 family p... 28 2.7
At5g07380.1 68418.m00845 hypothetical protein 28 2.7
At1g65280.1 68414.m07402 DNAJ heat shock N-terminal domain-conta... 28 2.7
At5g26850.1 68418.m03203 expressed protein 27 3.6
At5g51590.1 68418.m06396 DNA-binding protein-related contains Pf... 27 6.3
At2g23460.1 68415.m02801 extra-large guanine nucleotide binding ... 27 6.3
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 27 6.3
At3g22320.1 68416.m02819 DNA-directed RNA polymerase, putative s... 26 8.3
At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein ... 26 8.3
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 26 8.3
At1g51010.1 68414.m05734 expressed protein 26 8.3
At1g43730.1 68414.m05028 hypothetical protein 26 8.3
>At3g04920.1 68416.m00534 40S ribosomal protein S24 (RPS24A) similar
to ribosomal protein S19 GB:445612 [Solanum tuberosum]
and similar to ribosomal protein S24 GB:4506703 [Homo
sapiens]
Length = 133
Score = 72.9 bits (171), Expect = 7e-14
Identities = 31/60 (51%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
Frame = +3
Query: 78 QIVGAQQMVCEVLHPGKPTVSKTEIRDKLDKMYKV-TPDVVFVFGFKTNFGGGKSTGFAL 254
+++ +Q V +VLHPG+ VSK E+++KL +MY+V P+ +FVF F+T+FGGGKS+GF L
Sbjct: 17 RLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGKSSGFGL 76
Score = 70.5 bits (165), Expect = 4e-13
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +2
Query: 254 VYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 403
+YDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 77 IYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTK 126
Score = 36.3 bits (80), Expect = 0.008
Identities = 16/24 (66%), Positives = 20/24 (83%)
Frame = +1
Query: 31 MSEGRATIRTRKFMTNRLLARNRW 102
M+E TIRTRKFMTNRLL+R ++
Sbjct: 1 MAEKAVTIRTRKFMTNRLLSRKQF 24
>At5g28060.1 68418.m03382 40S ribosomal protein S24 (RPS24B) 40S
ribosomal protein S19, Cyanophora paradoxa,
EMBL:CPA245654
Length = 133
Score = 70.1 bits (164), Expect = 5e-13
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +2
Query: 254 VYDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 403
+YDT++ AKKFEPK+RL R+GL K +RKQ KERKNR KK+RG KK+K
Sbjct: 77 IYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTK 126
Score = 69.7 bits (163), Expect = 7e-13
Identities = 29/60 (48%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Frame = +3
Query: 78 QIVGAQQMVCEVLHPGKPTVSKTEIRDKLDKMYKV-TPDVVFVFGFKTNFGGGKSTGFAL 254
+++ +Q V +VLHPG+ VSK E+++KL +MY+V P+ +F F F+T+FGGGKS+G+ L
Sbjct: 17 RLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFGGGKSSGYGL 76
Score = 35.5 bits (78), Expect = 0.014
Identities = 16/24 (66%), Positives = 19/24 (79%)
Frame = +1
Query: 31 MSEGRATIRTRKFMTNRLLARNRW 102
M+E TIRTR FMTNRLLAR ++
Sbjct: 1 MAEKAVTIRTRNFMTNRLLARKQF 24
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 29.5 bits (63), Expect = 0.89
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +3
Query: 165 DKMYKVTPDVVFVFGFKTNFGGGKSTGFAL 254
D + V DV FV GF T+F G GFA+
Sbjct: 243 DASFFVGLDVGFVVGFVTSFAAGLDVGFAI 272
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 28.3 bits (60), Expect = 2.1
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 233 QVNWIRFVYDTLDLAKKFEPKHRLARHGLYEKKR 334
QV+W R V D K ++ + +A GL+ K+R
Sbjct: 711 QVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRR 744
>At5g09230.6 68418.m01054 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 271
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 70 MTNRLLARNRWFAKFYIQENQPSARPRSVTSSTKCTR 180
M N L +++W +F+ Q N PS + T S++ R
Sbjct: 1 MWNSGLQKSQWSIQFWFQTNYPSGDLKEFTRSSRARR 37
>At5g09230.4 68418.m01053 transcriptional regulator Sir2 family
protein contains Pfam domain PF02146: transcriptional
regulator, Sir2 family;
Length = 271
Score = 27.9 bits (59), Expect = 2.7
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +1
Query: 70 MTNRLLARNRWFAKFYIQENQPSARPRSVTSSTKCTR 180
M N L +++W +F+ Q N PS + T S++ R
Sbjct: 1 MWNSGLQKSQWSIQFWFQTNYPSGDLKEFTRSSRARR 37
>At5g07380.1 68418.m00845 hypothetical protein
Length = 595
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 39 RKSDYSHSQVHDQQIVGAQQMVCEVLHPGKPTVSKTEIRDKLDK 170
+ + Y S VH ++ A+Q +++PG T+ + I D+ DK
Sbjct: 448 KDATYEVSSVHSDSVIPAEQTFPHIVNPG--TLQEVRIIDEEDK 489
>At1g65280.1 68414.m07402 DNAJ heat shock N-terminal
domain-containing protein contains Pfam profile PF00226
DnaJ domain
Length = 598
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/27 (59%), Positives = 20/27 (74%), Gaps = 2/27 (7%)
Frame = +2
Query: 323 EKKRPTRK-QRKERKNR-MKKVRGTKK 397
EK+R +K +RKERK R MKK + TKK
Sbjct: 62 EKERKRKKIERKERKRRDMKKKKKTKK 88
>At5g26850.1 68418.m03203 expressed protein
Length = 919
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +3
Query: 99 MVCEVLHPGKPTVSKTEIRD-KLDKMYKVTPDVVFVFGFKTN 221
++ +++ P +SK E D K+ + + TPD F+FG + N
Sbjct: 712 IITDIVAKNLPKLSKLEEADVKMQILEQFTPDDAFMFGSRPN 753
>At5g51590.1 68418.m06396 DNA-binding protein-related contains Pfam
domain PF03479: Domain of unknown function (DUF296),
found in AT-hook motifs Pfam:PF02178
Length = 419
Score = 26.6 bits (56), Expect = 6.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -3
Query: 262 VVDKANPVDLPPPKFVLKPNTNTTSG 185
VV + PV PP F +P+TNT G
Sbjct: 345 VVIQPPPVSAPPVSFSHEPSTNTVHG 370
>At2g23460.1 68415.m02801 extra-large guanine nucleotide binding
protein / G-protein (XLG) identical to extra-large
G-protein (XLG) [Arabidopsis thaliana] GI:3201680
Length = 888
Score = 26.6 bits (56), Expect = 6.3
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -1
Query: 135 RLVFLDVKLRKPSVARQQSVGHELASANSRSSFTHFE 25
+L+ + L PS + + G +L SANSRS H E
Sbjct: 443 KLLCAVLSLPVPSKSTANASGEQLYSANSRSILDHLE 479
>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
ribosomal protein L2 [Gossypium arboreum] GI:17933133;
contains Pfam profile PF00181: Ribosomal Proteins L2,
RNA binding domain
Length = 307
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Frame = -3
Query: 253 KANPVD-LPPPKFVLKPNTNTTSGV 182
K N ++ PP+ +L+P TNT SG+
Sbjct: 82 KMNTIEKFAPPRKILEPTTNTISGL 106
>At3g22320.1 68416.m02819 DNA-directed RNA polymerase, putative
similar to SP|P19388 DNA-directed RNA polymerase II 23
kDa polypeptide (EC 2.7.7.6) {Homo sapiens}; contains
Pfam profiles PF03871: RNA polymerase Rpb5 N-terminal
domain, PF01191: RNA polymerase Rpb5 C-terminal domain
Length = 205
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 25 FKMSEGRATIRTRKFMTNRLLARNRWFAKFYIQEN-QPSAR 144
F E + ++T K TNR+ + N + A +Q+N P AR
Sbjct: 70 FFPDEAKVGVKTMKMYTNRMKSENVFRAILVVQQNLTPFAR 110
>At2g24500.1 68415.m02927 zinc finger (C2H2 type) family protein
contains Pfam profile: PF00096 zinc finger, C2H2 type
Length = 395
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 25 FKMSEGRATIRTRKFMTNRLLARNRWFAKFYIQENQPSARPRSVTSSTKCTRLL 186
F SE T RT +T+R L +R F ++Y Q+ PS++ V S T +++
Sbjct: 296 FGGSELVITKRTDNKVTSRTLG-SREFMRYYKQKPAPSSQKHIVNSLTSRYKMM 348
>At1g58050.1 68414.m06579 helicase domain-containing protein
contains similarity to SP|P24785 Dosage compensation
regulator (Male-less protein) (No action potential
protein) {Drosophila melanogaster}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 1417
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 260 DTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVRGTKKSK 403
D LD+ K HR R+ + + KQ++E K +M+K + K++
Sbjct: 550 DDLDVVKS---NHRARRNSSMAAECSSLKQKQENKKKMQKYKDMLKTR 594
>At1g51010.1 68414.m05734 expressed protein
Length = 171
Score = 26.2 bits (55), Expect = 8.3
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 257 YDTLDLAKKFEPKHRLARHGLYEKKRPTRKQRKERKNRMKKVR 385
+D ++ +K R+ LYEKK+ K++KE + +K +R
Sbjct: 46 FDAIEEVRKKLNDKRMKLQELYEKKKEVMKEKKETPH-LKSLR 87
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 26.2 bits (55), Expect = 8.3
Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -1
Query: 327 FSYRPWRA-NLCLGSNFLARSSVS*TKRIQLTCHLRSLS*NRIRTLHRE*P 178
+ Y WR NLCL + +AR S K IQLT R +RI LH P
Sbjct: 259 YVYAIWRERNLCLHTG-VARVFDSVLKDIQLTIRARLDPISRITELHPSAP 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,015,857
Number of Sequences: 28952
Number of extensions: 178193
Number of successful extensions: 666
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 595686720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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