Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10566
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 71 1e-13
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 48 2e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 40 4e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 39 7e-04
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 39 0.001
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 36 0.005
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 36 0.009
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 34 0.027
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 34 0.027
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 33 0.048
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 33 0.063
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 32 0.083
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 32 0.11
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 32 0.11
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.19
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 30 0.34
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 30 0.34
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 30 0.44
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 29 0.59
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 29 0.78
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 29 0.78
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 29 1.0
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 27 2.4
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 4.1
SPAC31G5.14 |gcv1|n313|glycine decarboxylase T subunit|Schizosac... 26 5.5
SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 26 5.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 26 7.2
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual 26 7.2
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 9.6
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 71.3 bits (167), Expect = 1e-13
Identities = 35/67 (52%), Positives = 46/67 (68%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LWMG LEP +TE+FI +N LG + + VK++RN++TG AGY FV F + EA AM
Sbjct: 95 LWMGELEPWVTEAFIQQVWNTLG-KAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-S 152
Query: 489 LNGKPIP 509
+N KPIP
Sbjct: 153 MNNKPIP 159
Score = 52.4 bits (120), Expect = 7e-08
Identities = 24/57 (42%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Frame = +2
Query: 530 FRLNTASRE--TRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
F+LN AS ++ E+S++VGDLSP+V+++ +Y +FAS+Y S K+AK++ D
Sbjct: 165 FKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTD 221
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 279 KSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQT 458
KS A + +++G L PN+ E + + F + K+M + T GY FV F
Sbjct: 178 KSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTD 237
Query: 459 DEEAIDAMHKLNGK 500
+ + A+ ++ G+
Sbjct: 238 ENDQKSALAEMQGQ 251
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 47.6 bits (108), Expect = 2e-06
Identities = 31/76 (40%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPA--GYAFVHFQTDEEA 470
M LWMG LEP M +FI + L + P+ VKVMR+K + Y FV F + A
Sbjct: 83 MSDTLWMGDLEPWMDATFIQQLWASLNE-PVNVKVMRSKASSSETLISYCFVQFSSSAAA 141
Query: 471 IDAMHKLNGKPIP-AH 515
A+ K N IP AH
Sbjct: 142 ERALMKYNNTMIPGAH 157
Score = 41.9 bits (94), Expect = 1e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Frame = +2
Query: 569 MQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
+ + EFS++VGDL P +D L+ F S Y S +AK+I+D
Sbjct: 176 VSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVD 217
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV---HFQTDEEAIDA 479
L++G+L+P + E + F+ LGQ A +V R++ G GY FV F+T + AI+A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDE-NGRSKGYGFVSYDSFETADAAIEA 159
Query: 480 MHK--LNGKPIPAHF 518
M+ L KPI +
Sbjct: 160 MNNQFLMNKPITVSY 174
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/98 (24%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Frame = +3
Query: 249 YIFEKYKSLMKSPKMAMQCQ-LWMGSLEPNMTESFIMAAFNRLGQ-RPLAVKVMRNKFTG 422
Y+ ++K+ +++ Q +++G+L TE I A F++ G+ R + + V ++FT
Sbjct: 13 YLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRIIMGV--DRFTK 70
Query: 423 EPAGYAFVHFQTDEEAIDAMHKLNGKPIPAHFQWLDLD 536
P G+ FV + +++A+D++ ++ + DLD
Sbjct: 71 TPCGFCFVEYFENQDALDSLKYISRTSLDERIIRADLD 108
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.1 bits (87), Expect = 7e-04
Identities = 19/42 (45%), Positives = 28/42 (66%)
Frame = +2
Query: 587 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTK 712
F ++VG+L DV+D SLY+ F S+Y S+ KV+ D G T+
Sbjct: 30 FRLFVGNLGNDVNDESLYQAF-SEYPSLVKTKVVRDREGKTR 70
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 38.7 bits (86), Expect = 0.001
Identities = 15/61 (24%), Positives = 38/61 (62%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G+L+ ++ E I+ F+ G+ P+ + ++R+K TG+ G+AF+ ++ + A+
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGE-PVDINLVRDKETGKSKGFAFLKYEDQRSTVLAVDN 91
Query: 489 L 491
+
Sbjct: 92 M 92
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 36.3 bits (80), Expect = 0.005
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEE 467
+++ L + ES I F R G P+ ++V+RNK TG+ GYAFV F+ + +
Sbjct: 102 MFLSRLSYDTKESDIEREFTRYG--PIERIRVVRNKVTGKSMGYAFVVFERERD 153
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 35.5 bits (78), Expect = 0.009
Identities = 19/64 (29%), Positives = 31/64 (48%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ + M E + F++ G V++MR T G+ F+ F T EEA A+
Sbjct: 103 LFVSGIASRMQEDELQQIFSKFGT-VTHVRIMREPVTKASRGFGFLSFSTVEEATSAIDN 161
Query: 489 LNGK 500
LN +
Sbjct: 162 LNSQ 165
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 33.9 bits (74), Expect = 0.027
Identities = 25/99 (25%), Positives = 43/99 (43%)
Frame = +3
Query: 303 CQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
C +++G L N+ + ++ F G + +V+ + +G GY +V F+T E A A+
Sbjct: 263 CTVFVGRLSWNVDDQWLGQEFEEYGTI-VGARVIMDGQSGRSKGYGYVDFETPEAAKAAV 321
Query: 483 HKLNGKPIPAHFQWLDLD*TQHPEKLEPICNMKENSLFG 599
K I LDL P +P + + FG
Sbjct: 322 AANGTKEIDGRMVNLDLS-NPRPANPQPYAQQRAGN-FG 358
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.027
Identities = 17/48 (35%), Positives = 28/48 (58%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHF 452
L++G+L + + + F R GQ P +V++ +K +G GYAFV F
Sbjct: 94 LFVGNLPKDSSVETLQLHFKRAGQVP-SVRIPTDKTSGRQKGYAFVEF 140
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 33.1 bits (72), Expect = 0.048
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ L P + + F+R G + ++ +V+R+K TG+ YAF+ F E A K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFG-KIISCQVIRDKETGDSLQYAFIEFDNKESVEKAYFK 304
Query: 489 L 491
+
Sbjct: 305 M 305
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 32.7 bits (71), Expect = 0.063
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++ +L + E + + F GQ V + +K T P G+A++ F ++A+ A
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLE-QVHMPIDKKTNNPKGFAYIDFHDADDAVRAYL 382
Query: 486 KLNGKP 503
+L+ KP
Sbjct: 383 ELDAKP 388
Score = 29.1 bits (62), Expect = 0.78
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 432 GYAFVHFQTDEEAIDAMHKLNGKPIPAH 515
G+ FV F+ A+ AMH +NG + H
Sbjct: 666 GFGFVEFKDKASAVAAMHAMNGFVLDGH 693
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 32.3 bits (70), Expect = 0.083
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 276 MKSPKMAMQCQ-LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHF 452
+++ K ++ Q +++G+++ ++T + + F G V ++ +KFTG P G+A++ F
Sbjct: 45 LRNDKESIDAQSVYVGNVDYSVTPEELQSHFASCGSVN-RVTILCDKFTGHPKGFAYIEF 103
Query: 453 QTDEEAIDAMHKLNG 497
+A+ LNG
Sbjct: 104 SEPSLVPNAL-LLNG 117
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++ +L+P + + F+ G + L+ KV ++ G GY FVHF + E A A+
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFG-KILSCKVAVDEL-GNAKGYGFVHFDSVESANAAIEH 227
Query: 489 LNG 497
+NG
Sbjct: 228 VNG 230
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 617 DVDDYSLYRVFASKYTSIKTAKVILDNSGYTKDMALSDLVMKMST*CT 760
D+ DY + + Y+S +A+V D+ G +KD A+ D ++ CT
Sbjct: 106 DIIDYDIEYIEQKSYSSKPSARVQKDDGGESKDEAILDFLLVQRGKCT 153
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 31.1 bits (67), Expect = 0.19
Identities = 16/68 (23%), Positives = 33/68 (48%)
Frame = +3
Query: 291 MAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEA 470
M C +++G++ M E ++ F + G + +++ + +G+P GY F + A
Sbjct: 1 MNPSCVVYVGNIPYEMAEEQVIDIFKQSGPVK-SFQLVIDPESGQPKGYGFCEYHDPATA 59
Query: 471 IDAMHKLN 494
A+ LN
Sbjct: 60 ASAVRNLN 67
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 30.3 bits (65), Expect = 0.34
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G++ +++E + FN++G K++ + TG GY F F E A+ K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVK-TFKLVLDPETGSGKGYGFCEFFDSETTAMAVRK 67
Query: 489 LNGKPI 506
LN +
Sbjct: 68 LNNSEL 73
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 30.3 bits (65), Expect = 0.34
Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQ-RPLAVKVMRNKFTGE--PAGYAFVHFQTDEEAID 476
++++G L + +S I + F +G R + + R + P+G AFV F E+
Sbjct: 45 RVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTRLVPSGIAFVTFNNQEDVDK 104
Query: 477 AMHKLNGKPI 506
A+ LNGK +
Sbjct: 105 AIETLNGKTL 114
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 29.9 bits (64), Expect = 0.44
Identities = 21/56 (37%), Positives = 27/56 (48%)
Frame = +3
Query: 363 FNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPAHFQWLD 530
F+ +G AV V+ N TGE GY FV F E+A A +L K + LD
Sbjct: 25 FSDVGPIKHAV-VVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLD 79
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 420 GEPAGYAFVHFQTDEEAIDAMHKLNGKPI 506
G G+AFV + + A +AM+ LNG I
Sbjct: 145 GRMCGFAFVWMKDRKAAEEAMNSLNGTEI 173
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 29.5 bits (63), Expect = 0.59
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 216 NATNPTLSNFPLNQTNCLGRPKCVNKL 136
N TNPT++N P TN L RPK + +
Sbjct: 400 NRTNPTVNNLPSYPTN-LARPKAIKPM 425
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 29.1 bits (62), Expect = 0.78
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQT 458
L++G L E + F++ G L +++ RN+ TG YAF+ F++
Sbjct: 107 LYVGRLPHGFYEKQMRMYFSQFGP-VLRLRMSRNRKTGSSKHYAFIEFES 155
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 29.1 bits (62), Expect = 0.78
Identities = 13/59 (22%), Positives = 33/59 (55%)
Frame = +3
Query: 291 MAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEE 467
M ++ ++++G L ++ S + + F+R G + ++ G +A+++F+TDE+
Sbjct: 1 MELEKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDED 59
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 155 QNVLINSIFQVYLLFLPSVKIFMTVHDLY 69
Q ++N + QVY LP + FM H+LY
Sbjct: 148 QGAILNKVIQVYESHLPYLLQFMVDHNLY 176
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Frame = +3
Query: 303 CQLWMGSLEPNMTESF--IMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
C L++ +L+ N+ + + F++ G R + + T GY FV F EA+
Sbjct: 419 CNLFVKNLDDNIVGNTQQLEELFSKFG-RIKSCTLASYPSTEISKGYGFVSFSHPFEAVQ 477
Query: 477 AMHKLNG 497
A++ LNG
Sbjct: 478 AINTLNG 484
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Frame = +3
Query: 453 QTDEEAIDAMHK--LNGKPIPAHFQWLD 530
+ D EAI+A +NGKP P F W++
Sbjct: 564 KNDLEAIEAAKNFHVNGKPSPTRFAWVN 591
>SPAC31G5.14 |gcv1|n313|glycine decarboxylase T
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +2
Query: 599 VGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYT 709
V L P+VD +S+ + S Y K K + SGYT
Sbjct: 178 VQKLIPNVD-FSVLKFGQSAYVDFKGVKCLFSRSGYT 213
>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/56 (25%), Positives = 28/56 (50%)
Frame = +3
Query: 315 MGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
+ L ++T+ + + F G P+A+ ++ + G FV F + E+A DA+
Sbjct: 248 VAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGTGFVLFASHEDAADAL 303
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Frame = -1
Query: 367 LNAAIMKLSVILGSK---LPIHN*HCIAIFGDFIRLLYFSNIYC 245
L++ +KLS ++ K +PI H A+F + +LY N YC
Sbjct: 249 LHSLAIKLSKLVTCKNEVVPIMVSHSPALFVGILAILYSGNAYC 292
>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
Length = 653
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -3
Query: 161 VDQNVLINSIFQVYLLFLPSVKIFMTVHDLYEITKKYATRACKIKL 24
+DQ +L +F V + FLP++ +F L ++ C+ L
Sbjct: 482 LDQLLLGTILFTVLIFFLPTIYVFYAAFALTRVSVMTCLAICETML 527
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +1
Query: 736 NEDEHVMHYCYEWLLWTRNKPLKI 807
NED+ CY LW RN+ K+
Sbjct: 941 NEDDEPGSICYNQRLWRRNRNEKL 964
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,572,568
Number of Sequences: 5004
Number of extensions: 78213
Number of successful extensions: 247
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 244
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -