Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10566
(808 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0) 43 3e-04
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0) 42 8e-04
SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 8e-04
SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0) 40 0.002
SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23) 40 0.002
SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33) 39 0.005
SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18) 39 0.005
SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.010
SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24) 38 0.013
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 38 0.013
SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.022
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0) 37 0.022
SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25) 35 0.068
SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23) 35 0.089
SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35) 34 0.16
SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21) 33 0.27
SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19) 32 0.63
SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6) 32 0.63
SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0) 32 0.63
SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.83
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35) 31 1.1
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15) 30 1.9
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.5
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 29 3.4
SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_17142| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11) 29 4.4
SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19) 29 5.9
>SB_45423| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 514
Score = 43.2 bits (97), Expect = 3e-04
Identities = 23/64 (35%), Positives = 37/64 (57%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++GSL N+TE+ + A F G +V+++ + T GY FV F+ E A AM
Sbjct: 243 RLYVGSLHFNITEAMVKAVFEPFGTVD-SVQLIYDSETNRSKGYGFVQFREAEAAKRAME 301
Query: 486 KLNG 497
++NG
Sbjct: 302 QMNG 305
>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 718
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQT--DEEAIDAM 482
L++G L P++TE+ + F+ G L+++V R+ T GYA+V+FQ + A++A+
Sbjct: 15 LYVGDLAPDVTEAMLYEKFSTAGS-VLSIRVCRDLVTRRSLGYAYVNFQQPGHDAALEAI 73
Query: 483 HKLNG 497
+++G
Sbjct: 74 ARVDG 78
Score = 37.9 bits (84), Expect = 0.010
Identities = 19/46 (41%), Positives = 29/46 (63%)
Frame = +3
Query: 387 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPAHFQW 524
+++KVM + G+ G+ FV F+T EEA +A++ LNGK I W
Sbjct: 136 VSLKVMTDP-EGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLW 180
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ +L+ + + + F+ G A KVM++ G G+ FV F + EEA A+ +
Sbjct: 214 LYIKNLDDPIDDERLREEFSPYGTISSA-KVMKDD-KGNSKGFGFVCFSSPEEATKAVTE 271
Query: 489 LNGK 500
+NG+
Sbjct: 272 MNGR 275
Score = 28.3 bits (60), Expect = 7.7
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = +2
Query: 590 SVWVGDLSPDVDDYSLYRVFAS 655
S++VGDL+PDV + LY F++
Sbjct: 14 SLYVGDLAPDVTEAMLYEKFST 35
>SB_23532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 41.5 bits (93), Expect = 8e-04
Identities = 21/71 (29%), Positives = 44/71 (61%)
Frame = +3
Query: 288 KMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEE 467
KM +C+ ++G+L+ + E+ + F+R + V+V+ ++ T P G+AFV F + +
Sbjct: 225 KMGEECKCYIGNLDFKVNEADLQDRFSRYDV--VDVQVISDRETQRPRGFAFVTFGSKKN 282
Query: 468 AIDAMHKLNGK 500
DA+++L+G+
Sbjct: 283 MEDAINELDGQ 293
Score = 35.9 bits (79), Expect = 0.039
Identities = 15/40 (37%), Positives = 27/40 (67%)
Frame = +3
Query: 387 LAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 506
L+VKV+ ++ TG P G+ FV F +++E A+ K +G+ +
Sbjct: 36 LSVKVITDRETGRPRGFGFVTFGSEDEMDKAIDKFDGEDL 75
>SB_38796| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 382
Score = 40.3 bits (90), Expect = 0.002
Identities = 19/78 (24%), Positives = 41/78 (52%)
Frame = +3
Query: 267 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 446
K+ + + + L++G+L+ + E + F+ G K+MR+ TG G+AF+
Sbjct: 88 KASAHNKNLDVGANLFIGNLDTEVDEKLLYDTFSAFGVILQTPKIMRDSDTGNSKGFAFI 147
Query: 447 HFQTDEEAIDAMHKLNGK 500
+F + + + A+ +NG+
Sbjct: 148 NFASFDASDAAIEAMNGQ 165
>SB_42891| Best HMM Match : DUF537 (HMM E-Value=1.2e-23)
Length = 2386
Score = 40.3 bits (90), Expect = 0.002
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +3
Query: 255 FEKYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAG 434
F ++ + + KMA +W+G L ++TE+ ++ FN+ G P+ V+ +G+
Sbjct: 508 FWVFQEVNEGFKMAASFPVWIGGLSEDVTENVLLELFNKFG--PVKDVVILRDESGKSRQ 565
Query: 435 YAFVHFQTDEEAIDAMHKLNG 497
FVHF + + A A +NG
Sbjct: 566 SGFVHFWSSDVAEAANVGMNG 586
>SB_1873| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 40.3 bits (90), Expect = 0.002
Identities = 18/56 (32%), Positives = 35/56 (62%)
Frame = +3
Query: 330 PNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 497
P+M++ I F +G + K++R++ TG+ GYAFV++ ++A A+ ++NG
Sbjct: 36 PSMSQEDIKKIFGTVGN-VTSCKLIRDRATGQSLGYAFVNYDNPDDANKAVREMNG 90
>SB_46050| Best HMM Match : RRM_1 (HMM E-Value=1.7e-33)
Length = 392
Score = 38.7 bits (86), Expect = 0.005
Identities = 17/63 (26%), Positives = 37/63 (58%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G++ +E + F+ +G ++ +++ ++ TG+P GY F ++ E A+ AM
Sbjct: 27 VFVGNIPYEASEEQLKEIFSEVGP-VISFRLVFDRETGKPKGYGFCEYKDQETALSAMRN 85
Query: 489 LNG 497
LNG
Sbjct: 86 LNG 88
>SB_27480| Best HMM Match : RRM_1 (HMM E-Value=3.7e-18)
Length = 209
Score = 38.7 bits (86), Expect = 0.005
Identities = 21/62 (33%), Positives = 36/62 (58%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ L P T+ + F+R G L+ +V+R++ TGE YAF+ F+ DE+ A K
Sbjct: 122 LFVCKLNPVTTDEDLEIIFSRFGTI-LSCEVIRDQKTGESLQYAFIEFEKDEDCERAYFK 180
Query: 489 LN 494
++
Sbjct: 181 MD 182
>SB_46435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 558
Score = 37.9 bits (84), Expect = 0.010
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFT--GEPAGYAFVHFQTDEEAIDA 479
+LW+G+L+ ++E I+ + G+ + GEP GY FV F+ E+A A
Sbjct: 388 KLWIGNLDKRLSEFNILKILQQFGEIEHFQFLFHGNGPNRGEPRGYCFVEFKKKEDARKA 447
Query: 480 MHKLNGK 500
+ LN K
Sbjct: 448 LRGLNKK 454
>SB_39934| Best HMM Match : RRM_1 (HMM E-Value=6.5e-24)
Length = 343
Score = 37.5 bits (83), Expect = 0.013
Identities = 20/58 (34%), Positives = 37/58 (63%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
+++GSL P+ ES I F+ LG++ VK +R +G+ G+AFV + +EA++++
Sbjct: 44 IFVGSLHPSTVESTIFEYFSTLGEQVEHVKCIRT-LSGKSKGFAFVRLR-KKEAVESV 99
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 37.5 bits (83), Expect = 0.013
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++G L T+ + F++ G+ + V + + TG P G+AFV F+ EA DA+
Sbjct: 30 KLFVGGLSYETTKESLKEYFSKYGEL-VGVDIKMDALTGRPRGFAFVQFKHQSEA-DAID 87
Query: 486 KLNGKPI--PAHFQ 521
PI P H +
Sbjct: 88 PKPAAPIGKPPHLR 101
>SB_8823| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1309
Score = 36.7 bits (81), Expect = 0.022
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = +2
Query: 590 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGY 706
+V+VG+L PDV DY L ++F S+Y SI KV D GY
Sbjct: 616 TVYVGNLPPDVKDYELQQMF-SQYGSILETKVFAD-KGY 652
Score = 36.3 bits (80), Expect = 0.029
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAG---YAFVHFQTDEEAIDA 479
L++G+L+P T+ I + FN++ KV+R K P Y FV F+T +A +A
Sbjct: 371 LYVGNLDPKCTQELICSIFNKI------AKVVRCKMINSPTDKGPYCFVEFETHADAQEA 424
Query: 480 MHKLNGKPI 506
+++ + +
Sbjct: 425 KFRMDQRTV 433
>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 593
Score = 36.7 bits (81), Expect = 0.022
Identities = 15/63 (23%), Positives = 34/63 (53%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
++++ S+ P++ E I + F G + + + + TG+ GY F+ ++ + A DA+
Sbjct: 200 RIYIASVHPDLLEDDIKSVFEAFG-KVVHCSLSKEPMTGKHKGYGFIEYENQQSANDAIA 258
Query: 486 KLN 494
+N
Sbjct: 259 SMN 261
Score = 35.9 bits (79), Expect = 0.039
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Frame = +3
Query: 279 KSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVHFQ 455
K +A+ C++++GS+ + E I AF+ G P+ + + + + G+AFV +
Sbjct: 94 KQRALALMCRVYVGSINFELREEHIRTAFHPFG--PINKIDLSWDPLNMKHKGFAFVEYD 151
Query: 456 TDEEAIDAMHKLNG 497
E A A+ ++NG
Sbjct: 152 LPEAAQLALEQMNG 165
>SB_28395| Best HMM Match : RRM_1 (HMM E-Value=3.9e-25)
Length = 159
Score = 35.1 bits (77), Expect = 0.068
Identities = 20/70 (28%), Positives = 39/70 (55%)
Frame = +3
Query: 291 MAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEA 470
M + + ++G+L ++ E + F+ G + VKV+ ++ TG P G+ FV F + EE
Sbjct: 1 MGEEYRCYIGNLSYSVDEQALEEKFH--GCDVVDVKVITDRETGRPRGFGFVTFGSKEEM 58
Query: 471 IDAMHKLNGK 500
A+ + +G+
Sbjct: 59 EKAIDEFDGQ 68
>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
Length = 201
Score = 34.7 bits (76), Expect = 0.089
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
M +L++G+L N S + AF + G R V V RN P G+AFV ++ +A +
Sbjct: 2 MTTKLYVGNLGRNADSSELERAFEKFG-RLSKVWVARN-----PPGFAFVEYEDYRDAEE 55
Query: 477 AMHKLNG 497
A+ +L+G
Sbjct: 56 AVRELDG 62
>SB_41412| Best HMM Match : RRM_1 (HMM E-Value=2.9e-35)
Length = 1118
Score = 33.9 bits (74), Expect = 0.16
Identities = 21/68 (30%), Positives = 33/68 (48%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
M C++++G L TE + F G R + + N Y FV F+ D +A D
Sbjct: 1 MNCRVYLGRLPYGTTEDDVRRFFRSYG-RLRDINLKNN--------YGFVEFEDDRDADD 51
Query: 477 AMHKLNGK 500
A+++ NGK
Sbjct: 52 AVYECNGK 59
>SB_52510| Best HMM Match : RRM_1 (HMM E-Value=8.1e-21)
Length = 304
Score = 33.1 bits (72), Expect = 0.27
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Frame = +3
Query: 321 SLEPNMTESFIMAAFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 497
+L ES + F LG P++ + + ++KFT + G+AF++F E+A A+ L+G
Sbjct: 187 NLSEETRESDLQELFRPLG--PISRIFLAKDKFTNQSKGFAFINFVHREDAARAIEVLSG 244
>SB_35697| Best HMM Match : RRM_1 (HMM E-Value=1.3e-19)
Length = 168
Score = 31.9 bits (69), Expect = 0.63
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 303 CQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
C++++G + ++ E ++ F G P+ + F G+ GYAFV + + ++A +
Sbjct: 74 CEVFVGKIPRDLYEDELVPVFETAG--PIYEVRLMMDFNGQNRGYAFVVYTSKDDAKRCV 131
Query: 483 HKLNGKPI 506
LN I
Sbjct: 132 KTLNNYEI 139
>SB_52108| Best HMM Match : DUF1053 (HMM E-Value=6)
Length = 349
Score = 31.9 bits (69), Expect = 0.63
Identities = 12/18 (66%), Positives = 17/18 (94%)
Frame = +2
Query: 584 EFSVWVGDLSPDVDDYSL 637
EFS++VGDL+PDV+D+ L
Sbjct: 116 EFSIFVGDLTPDVNDHML 133
>SB_3536| Best HMM Match : RRM_1 (HMM E-Value=0)
Length = 1026
Score = 31.9 bits (69), Expect = 0.63
Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 14/104 (13%)
Frame = +3
Query: 234 LIKWQYIFEKYKSLMKSPK-MAMQCQLWMGSLEPNMTESFIMAAFNRLG----QRP---L 389
L+K Q + KS +++P + +L +L + E + F++ G +P +
Sbjct: 545 LLKRQKAEAEKKSKLQNPNYFVSKTRLCARNLPLKLNEKELSKVFSKAGTLDNHKPAKVV 604
Query: 390 AVKVMRNKFT------GEPAGYAFVHFQTDEEAIDAMHKLNGKP 503
+V +MR+K G P G+AFV F +EA+ A+ N P
Sbjct: 605 SVLLMRSKERLDSSGKGRPLGFAFVEFTNHKEALAALRATNNNP 648
Score = 28.7 bits (61), Expect = 5.9
Identities = 23/82 (28%), Positives = 40/82 (48%)
Frame = +3
Query: 261 KYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYA 440
K KSL K+P+ + + L ++TE I +LG+ V+ G + A
Sbjct: 146 KSKSLRKAPQTDAGRTVILSGLPASITEKQIYKRCRKLGE----VEKTIFPVAGHDSPTA 201
Query: 441 FVHFQTDEEAIDAMHKLNGKPI 506
+ F++ ++A A+ KLNGK +
Sbjct: 202 SLLFKSYKDARQAVAKLNGKTL 223
>SB_37378| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 781
Score = 31.5 bits (68), Expect = 0.83
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +3
Query: 405 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIP 509
RN TGE G+A+V + + AI A KLNG P
Sbjct: 235 RNYNTGESKGFAYVTYNSVGSAIYAKEKLNGFEYP 269
>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
Length = 929
Score = 31.1 bits (67), Expect = 1.1
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +3
Query: 432 GYAFVHFQTDEEAIDAMHKLNGKPI 506
GY FV F +A DA+H LNG+ +
Sbjct: 723 GYGFVEFDDHRDAEDAVHDLNGRDL 747
>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 871
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/75 (29%), Positives = 38/75 (50%)
Frame = +3
Query: 267 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 446
K+L SP + L++G+L TE+ + G + ++R++ TG+ GY FV
Sbjct: 102 KTLNVSPAPP-ESLLFVGNLPFEFTETQFGDLMSPYGNIE-RLFLVRSEVTGDSKGYGFV 159
Query: 447 HFQTDEEAIDAMHKL 491
+ T E A+ A +L
Sbjct: 160 EYATRENAMQAKQQL 174
>SB_43251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 30.3 bits (65), Expect = 1.9
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 393 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPIPAH---FQWLDL 533
+ + R++ T E G+AFV F +A DAM ++ + A F+W D+
Sbjct: 45 IYIPRDRNTHESRGFAFVRFYEKRDAEDAMDCMDATCLMAEKFVFRWRDM 94
>SB_29577| Best HMM Match : RRM_1 (HMM E-Value=8.5e-15)
Length = 171
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEE---AIDA 479
+++G + E+ I F + G +++ R+K + GYAFV F DE A D
Sbjct: 100 IYLGHIPHGFFENEIKKFFEQFGTVN-RIRLSRSKKSARSKGYAFVEFACDEVAKIAADT 158
Query: 480 MH 485
MH
Sbjct: 159 MH 160
>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 184
Score = 29.9 bits (64), Expect = 2.5
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Frame = +3
Query: 288 KMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDE 464
+ A ++++GSL N ++ I F G PL V V RN P G+AF F
Sbjct: 27 RRAEMTKVYIGSLGDNASKREIENEFGYYG--PLKDVWVARN-----PPGFAFCIFDDRR 79
Query: 465 EAIDAMHKLNGKPI 506
+A DA+ +L+G+ I
Sbjct: 80 DAEDAVRELDGRYI 93
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/58 (31%), Positives = 32/58 (55%)
Frame = +2
Query: 602 GDLSPDVDDYSLYRVFASKYTSIKTAKVILDNSGYTKDMALSDLVMKMST*CTIAMNG 775
GD SP + + R+ K+ + ++V +NS YT+ +A+ D+ +K TI +NG
Sbjct: 204 GDSSPVAEKTRISRM--RKFITNIASEVTSENSFYTQSVAIGDVFLKEIA-ATICLNG 258
>SB_1585| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 721
Score = 29.5 bits (63), Expect = 3.4
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQ-RPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
L++ ++ E I F+ G+ + L V + R TG GYA V ++T +EA A+
Sbjct: 295 LFVTNIHEEAQEDDIHELFSDYGEIKNLHVNLDRR--TGFIKGYALVEYETFKEAQSALE 352
Query: 486 KLNG 497
LNG
Sbjct: 353 ALNG 356
>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 29.1 bits (62), Expect = 4.4
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
++++G++ N ++ I F G PL V V RN P G+AF F+ +A DA+
Sbjct: 3 RVYIGNIGDNASKREIEREFETFG--PLRDVWVARN-----PPGFAFCVFEDRRDAEDAV 55
Query: 483 HKLNGKPI 506
+L+G+ I
Sbjct: 56 RELDGRYI 63
>SB_24047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2905
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQ 380
+C+L + SL PN F +AA+NR GQ
Sbjct: 760 KCRLMVKSLVPNEKYVFAVAAYNRQGQ 786
>SB_17142| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 29.1 bits (62), Expect = 4.4
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = -1
Query: 562 SSFSGCCV*SKSNHWKCAGMGFPFNLCIAS 473
S + C S +HW C G+ +P N+ + +
Sbjct: 62 SGYVSCAGWSYRSHWGCKGLAYPLNMFVTN 91
>SB_11106| Best HMM Match : RRM_1 (HMM E-Value=1.8e-11)
Length = 67
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 432 GYAFVHFQTDEEAIDAMHKLNGK 500
GY FV F ++A DA+++ NGK
Sbjct: 39 GYGFVEFDYSDDAEDAVYECNGK 61
>SB_23824| Best HMM Match : RRM_1 (HMM E-Value=1.9e-19)
Length = 623
Score = 28.7 bits (61), Expect = 5.9
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +3
Query: 285 PKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDE 464
PK M L + I+ F+ L +P+A++ + NK G+P+G AFV F +
Sbjct: 162 PKPTTPWTCKMRGLPFKAKDKHILEFFSPL--KPVAIRFVMNK-KGQPSGCAFVDFSSKS 218
Query: 465 EAIDAMHK 488
+ A+ +
Sbjct: 219 DLEKALKR 226
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,312,683
Number of Sequences: 59808
Number of extensions: 531210
Number of successful extensions: 1038
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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