Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10566
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   5.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   5.8  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   5.8  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   7.7  

>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 168 SLFGLVESLKVLDLLR*KLESVLIKWQYIFEKYK 269
           ++ G V+S    DLL     +  I W+Y+ +KYK
Sbjct: 108 TMHGTVQSYDKYDLLENVNNAARINWEYL-DKYK 140


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +3

Query: 306  QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPA 431
            +L +  L P    + ++ A+N++G  PL+  ++       P+
Sbjct: 1071 ELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPS 1112


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +3

Query: 306  QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPA 431
            +L +  L P    + ++ A+N++G  PL+  ++       P+
Sbjct: 1067 ELRLTGLRPYTKYTLVVQAYNQVGSGPLSEPLLTQTMEDVPS 1108


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%), Gaps = 4/23 (17%)
 Frame = -3

Query: 482 HCVNCFFIRLKMHKS----ISCR 426
           HC NC   +++ HK     ISCR
Sbjct: 608 HCFNCTQYQIRDHKDVTQCISCR 630


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -2

Query: 762 IVHYVLIFITKSD 724
           IVHY + FIT+SD
Sbjct: 511 IVHYGIGFITQSD 523


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,062
Number of Sequences: 438
Number of extensions: 4945
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)