Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10566
(808 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putativ... 58 5e-09
At3g19130.1 68416.m02429 RNA-binding protein, putative similar t... 57 2e-08
At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putativ... 57 2e-08
At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putativ... 57 2e-08
At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putativ... 56 4e-08
At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putativ... 56 4e-08
At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putativ... 56 4e-08
At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putativ... 55 6e-08
At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative 54 8e-08
At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putativ... 54 8e-08
At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondria... 46 4e-05
At2g23350.1 68415.m02788 polyadenylate-binding protein, putative... 44 1e-04
At4g03110.2 68417.m00421 RNA-binding protein, putative similar t... 44 2e-04
At4g03110.1 68417.m00420 RNA-binding protein, putative similar t... 44 2e-04
At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)... 43 2e-04
At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putat... 43 3e-04
At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing ... 42 4e-04
At3g16380.1 68416.m02074 polyadenylate-binding protein, putative... 41 8e-04
At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28... 41 0.001
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 41 0.001
At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing ... 41 0.001
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 41 0.001
At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)... 40 0.001
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ... 40 0.001
At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing ... 40 0.001
At1g74230.1 68414.m08597 glycine-rich RNA-binding protein simila... 40 0.002
At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing ... 40 0.003
At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing ... 40 0.003
At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative simi... 40 0.003
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 39 0.003
At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing ... 39 0.004
At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing ... 39 0.004
At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing ... 38 0.006
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein... 38 0.006
At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing ... 38 0.008
At3g46020.1 68416.m04979 RNA-binding protein, putative similar t... 38 0.008
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 38 0.008
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.008
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.008
At5g41690.1 68418.m05067 polyadenylate-binding protein, putative... 38 0.010
At5g51300.2 68418.m06360 splicing factor-related contains simila... 37 0.014
At5g51300.1 68418.m06359 splicing factor-related contains simila... 37 0.014
At2g36660.1 68415.m04496 polyadenylate-binding protein, putative... 37 0.018
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 37 0.018
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 36 0.024
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ... 36 0.024
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.024
At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast, ... 36 0.024
At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33... 36 0.042
At1g34140.1 68414.m04235 polyadenylate-binding protein, putative... 36 0.042
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 36 0.042
At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein... 35 0.055
At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing ... 35 0.073
At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL3... 34 0.097
At5g44200.1 68418.m05408 nuclear cap-binding protein, putative s... 34 0.13
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 34 0.13
At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing ... 33 0.17
At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing ... 33 0.17
At1g54080.1 68414.m06162 oligouridylate-binding protein, putativ... 33 0.17
At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing ... 33 0.22
At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing ... 33 0.22
At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing ... 33 0.22
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 33 0.22
At1g17370.1 68414.m02118 oligouridylate-binding protein, putativ... 33 0.22
At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing ... 33 0.29
At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast, ... 33 0.29
At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing ... 33 0.29
At1g71800.1 68414.m08298 cleavage stimulation factor, putative s... 33 0.29
At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC... 32 0.39
At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC... 32 0.39
At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing ... 32 0.39
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.39
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.39
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 32 0.39
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 32 0.52
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 32 0.52
At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing ... 31 0.90
At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing ... 31 0.90
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 31 0.90
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 31 0.90
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 31 1.2
At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing ... 31 1.2
At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identic... 31 1.2
At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast, ... 30 1.6
At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing ... 30 2.1
At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing ... 30 2.1
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 2.1
At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30... 29 2.7
At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing ... 29 2.7
At2g47310.1 68415.m05906 flowering time control protein-related ... 29 2.7
At1g54080.2 68414.m06163 oligouridylate-binding protein, putativ... 29 2.7
At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (... 29 3.6
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 29 4.8
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 29 4.8
At1g11350.1 68414.m01303 S-locus lectin protein kinase family pr... 28 6.3
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 28 6.3
At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing ... 28 8.4
>At5g54900.1 68418.m06838 RNA-binding protein 45 (RBP45), putative
contains similarity to polyadenylate-binding protein 5
Length = 387
Score = 58.4 bits (135), Expect = 5e-09
Identities = 30/79 (37%), Positives = 45/79 (56%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+G L+ M E++IM+ F + G+ A KV+RNK TG+ GY F+ F + A +
Sbjct: 62 LWIGDLQQWMDENYIMSVFAQSGEATSA-KVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 489 LNGKPIPAHFQWLDLD*TQ 545
NG P+P+ Q L+ Q
Sbjct: 121 YNGAPMPSTEQTFRLNWAQ 139
Score = 44.4 bits (100), Expect = 9e-05
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +2
Query: 530 FRLNTASRET-RANMQHER-EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS 700
FRLN A Q E + +++VGDL+P+V DY L F + Y S+K AKV+LD +
Sbjct: 133 FRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRT 191
Score = 42.3 bits (95), Expect = 4e-04
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P +T+ + F + KV+ ++ TG GY FV F + E + AM +
Sbjct: 156 IFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTE 215
Query: 489 LNGK 500
+NG+
Sbjct: 216 MNGQ 219
>At3g19130.1 68416.m02429 RNA-binding protein, putative similar to
RNA Binding Protein 47 [Nicotiana plumbaginifolia]
GI:9663769, DNA binding protein ACBF GB:AAC49850 from
[Nicotiana tabacum]; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 435
Score = 56.8 bits (131), Expect = 2e-08
Identities = 29/64 (45%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Frame = +2
Query: 530 FRLNTASRET--RANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 700
FR+N AS T + +++ + SV+VGDLSPDV D L+ F+ +Y S+K+AKV++D N+
Sbjct: 181 FRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNT 240
Query: 701 GYTK 712
G +K
Sbjct: 241 GRSK 244
Score = 47.2 bits (107), Expect = 1e-05
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+G L M E+++ + F+ G+ +VKV+RNK T + GY FV F + A + +
Sbjct: 110 LWVGDLLHWMDETYLHSCFSHTGEVS-SVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 489 LNGKPIP 509
+G +P
Sbjct: 169 YSGSVMP 175
Score = 37.1 bits (82), Expect = 0.014
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P++T+ + F+ + KV+ + TG GY FV F + E A+ +
Sbjct: 204 VFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTE 263
Query: 489 LNG 497
+NG
Sbjct: 264 MNG 266
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 709 KGYGFVRFGNEDE 747
KGYGFVRFG+E+E
Sbjct: 244 KGYGFVRFGDENE 256
>At1g47490.2 68414.m05269 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 310
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = +2
Query: 530 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 700
FRLN AS T + S++VGDLSPDV D L+ F+ KY S+K AKV+LD N+
Sbjct: 176 FRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANT 235
Query: 701 GYTK 712
G +K
Sbjct: 236 GRSK 239
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+W+G L M E+++ ++F +R + +VKV+RNK G GY FV F++ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 486 KLNGKPIP 509
+ NG +P
Sbjct: 163 EFNGTTMP 170
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P+++++ + F+ A KV+ + TG GY FV F + E AM +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 489 LNG 497
+NG
Sbjct: 259 MNG 261
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 709 KGYGFVRFGNEDE 747
KGYGFVRFG+E+E
Sbjct: 239 KGYGFVRFGDENE 251
>At1g47490.1 68414.m05270 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 432
Score = 56.8 bits (131), Expect = 2e-08
Identities = 31/64 (48%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = +2
Query: 530 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 700
FRLN AS T + S++VGDLSPDV D L+ F+ KY S+K AKV+LD N+
Sbjct: 176 FRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANT 235
Query: 701 GYTK 712
G +K
Sbjct: 236 GRSK 239
Score = 48.0 bits (109), Expect = 7e-06
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+W+G L M E+++ ++F +R + +VKV+RNK G GY FV F++ + A +
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 486 KLNGKPIP 509
+ NG +P
Sbjct: 163 EFNGTTMP 170
Score = 41.1 bits (92), Expect = 8e-04
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P+++++ + F+ A KV+ + TG GY FV F + E AM +
Sbjct: 199 IFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 258
Query: 489 LNG 497
+NG
Sbjct: 259 MNG 261
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 709 KGYGFVRFGNEDE 747
KGYGFVRFG+E+E
Sbjct: 239 KGYGFVRFGDENE 251
>At1g47500.1 68414.m05272 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein GI:1899187 from
[Nicotiana tabacum]
Length = 434
Score = 55.6 bits (128), Expect = 4e-08
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+W+G L+ M E+++ +AF +R + ++KV+RNK G GY FV F++ + A +
Sbjct: 105 IWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVLQ 164
Query: 486 KLNGKPIP 509
+ NG P+P
Sbjct: 165 EFNGAPMP 172
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = +2
Query: 530 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 700
FRLN AS T + S++VGDL+PDV D L+ F+ KY S+K AKV+LD N+
Sbjct: 178 FRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANT 237
Query: 701 GYTK 712
G +K
Sbjct: 238 GRSK 241
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/63 (30%), Positives = 34/63 (53%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P+++++ + F+ A KV+ + TG GY FV F + E AM +
Sbjct: 201 IFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTE 260
Query: 489 LNG 497
+NG
Sbjct: 261 MNG 263
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 709 KGYGFVRFGNEDE 747
KGYGFVRFG+E+E
Sbjct: 241 KGYGFVRFGDENE 253
>At1g11650.2 68414.m01337 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 405
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 512 TFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 691
+FP FRLN AS + +++++VGDL+ DV DY L F + Y S+K AKV++
Sbjct: 130 SFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVI 189
Query: 692 DN-SGYTK 712
D +G TK
Sbjct: 190 DRVTGRTK 197
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+G L+ M E+F+ F G+ ++ KV+RNK TG+ GY F+ F + A +
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEM-VSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 489 LNGKPIPA 512
N PIP+
Sbjct: 123 FNNAPIPS 130
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L ++T+ ++ F KV+ ++ TG GY FV F + E I AM +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 489 LNGKP 503
+NG P
Sbjct: 217 MNGVP 221
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 709 KGYGFVRFGNEDEHV 753
KGYGFVRF +E E +
Sbjct: 197 KGYGFVRFSDESEQI 211
>At1g11650.1 68414.m01336 RNA-binding protein 45 (RBP45), putative
similar to gb|U90212 DNA binding protein ACBF from
Nicotiana tabacum and contains 3 PF|00076 RNA
recognition motif domains. ESTs gb|T44278, gb|R65195,
gb|N65904, gb|H37499, gb|R90487, gb|N95952, gb|T44278,
gb|Z20166, gb|N96891, gb|W43137, gb|F15504, gb|F1
Length = 306
Score = 55.6 bits (128), Expect = 4e-08
Identities = 28/68 (41%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +2
Query: 512 TFPVVRFRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVIL 691
+FP FRLN AS + +++++VGDL+ DV DY L F + Y S+K AKV++
Sbjct: 130 SFPDQLFRLNWASLSSGDKRDDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVI 189
Query: 692 DN-SGYTK 712
D +G TK
Sbjct: 190 DRVTGRTK 197
Score = 52.8 bits (121), Expect = 3e-07
Identities = 25/68 (36%), Positives = 38/68 (55%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+G L+ M E+F+ F G+ ++ KV+RNK TG+ GY F+ F + A +
Sbjct: 64 LWIGDLQYWMDENFLYGCFAHTGEM-VSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 489 LNGKPIPA 512
N PIP+
Sbjct: 123 FNNAPIPS 130
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L ++T+ ++ F KV+ ++ TG GY FV F + E I AM +
Sbjct: 157 IFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTE 216
Query: 489 LNGKP 503
+NG P
Sbjct: 217 MNGVP 221
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 709 KGYGFVRFGNEDEHV 753
KGYGFVRF +E E +
Sbjct: 197 KGYGFVRFSDESEQI 211
>At1g49600.1 68414.m05561 RNA-binding protein 47 (RBP47), putative
similar to DNA binding protein ACBF GB:U90212 GI:1899187
from [Nicotiana tabacum]
Length = 445
Score = 54.8 bits (126), Expect = 6e-08
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Frame = +2
Query: 530 FRLNTASRETRANMQHER--EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD-NS 700
FRLN AS T E + S++VGDL+PDV D L FA +Y S+K AKV++D N+
Sbjct: 192 FRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNT 251
Query: 701 GYTK 712
G +K
Sbjct: 252 GRSK 255
Score = 44.0 bits (99), Expect = 1e-04
Identities = 23/67 (34%), Positives = 37/67 (55%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+G L M E+++ F+ + +VKV+RNK T + GY FV F + A +A+
Sbjct: 121 LWVGDLLHWMDETYLHTCFSHTNEVS-SVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 489 LNGKPIP 509
+G +P
Sbjct: 180 FSGVTMP 186
Score = 37.5 bits (83), Expect = 0.010
Identities = 18/63 (28%), Positives = 33/63 (52%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P+++++ ++ F KV+ + TG GY FV F + E AM +
Sbjct: 215 IFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE 274
Query: 489 LNG 497
+NG
Sbjct: 275 MNG 277
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/13 (84%), Positives = 13/13 (100%)
Frame = +1
Query: 709 KGYGFVRFGNEDE 747
KGYGFVRFG+E+E
Sbjct: 255 KGYGFVRFGDENE 267
>At5g19350.1 68418.m02306 RNA-binding protein 45 (RBP45), putative
Length = 425
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/67 (35%), Positives = 42/67 (62%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+G L+ + E+++ + F++ G+ ++VKV+RNK TG+P GY F+ F + A +
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGEL-VSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 489 LNGKPIP 509
NG +P
Sbjct: 85 YNGTQMP 91
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +2
Query: 530 FRLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS 700
FRLN AS + + + S++VGDL+PDV DY L F Y+S++ AKV+ D S
Sbjct: 97 FRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPS 153
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P++T+ + F KV+ + TG GY FV F + E AM +
Sbjct: 118 IFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAE 177
Query: 489 LNG 497
+NG
Sbjct: 178 MNG 180
Score = 34.7 bits (76), Expect = 0.073
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +3
Query: 285 PKMAMQCQ-LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTD 461
P+ + C + + +L+ N+TE + AF++LG+ + VK+ K GY +V F+T
Sbjct: 230 PESDVTCTTISVANLDQNVTEEELKKAFSQLGE-VIYVKIPATK------GYGYVQFKTR 282
Query: 462 EEAIDAMHKLNGKPI 506
A +A+ ++ G+ I
Sbjct: 283 PSAEEAVQRMQGQVI 297
>At4g27000.1 68417.m03884 RNA-binding protein 45 (RBP45), putative
DNA binding protein ACBF - Nicotiana tabacum,
PID:g1899188
Length = 415
Score = 54.4 bits (125), Expect = 8e-08
Identities = 29/79 (36%), Positives = 41/79 (51%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+G L+P M E+++M F G+ A KV+RNK G GY F+ F A +
Sbjct: 82 LWIGDLQPWMDENYLMNVFGLTGEAT-AAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 489 LNGKPIPAHFQWLDLD*TQ 545
NG P+P+ Q L+ Q
Sbjct: 141 YNGAPMPSSEQAFRLNWAQ 159
Score = 47.6 bits (108), Expect = 1e-05
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +2
Query: 530 FRLNTASRETRANMQHER-EFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS 700
FRLN A Q E E +V+VGDL+PDV D+ L F + Y+S+K AKV+ D +
Sbjct: 153 FRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRT 210
Score = 45.6 bits (103), Expect = 4e-05
Identities = 20/64 (31%), Positives = 35/64 (54%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L P++T+ + F + KV+ ++ TG GY FV F + E I AM +
Sbjct: 175 VFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTE 234
Query: 489 LNGK 500
+NG+
Sbjct: 235 MNGQ 238
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
Frame = +2
Query: 590 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDN--SGYTKDMALSDLV 736
S+W+GDL P +D+ L VF T TA ++ N +GY++ + V
Sbjct: 81 SLWIGDLQPWMDENYLMNVFG--LTGEATAAKVIRNKQNGYSEGYGFIEFV 129
Score = 27.9 bits (59), Expect = 8.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = +1
Query: 709 KGYGFVRFGNEDEHV 753
KGYGFVRF +E E +
Sbjct: 215 KGYGFVRFADESEQI 229
>At5g47320.1 68418.m05833 30S ribosomal protein S19, mitochondrial
(RPS19)
Length = 212
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
M +L++G L P E + AF+ A +VM NK TG GY FV+F +++ A
Sbjct: 29 MSTKLYIGGLSPGTDEHSLKDAFSSFNGVTEA-RVMTNKVTGRSRGYGFVNFISEDSANS 87
Query: 477 AMHKLNGKPI 506
A+ +NG+ +
Sbjct: 88 AISAMNGQEL 97
>At2g23350.1 68415.m02788 polyadenylate-binding protein, putative /
PABP, putative
Length = 662
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/64 (34%), Positives = 38/64 (59%)
Frame = +3
Query: 303 CQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
C L++G L+ N+T+S + F + Q ++V+V R+ T GY +V++ ++A AM
Sbjct: 46 CSLYVGDLDFNVTDSQLYDYFTEVCQ-VVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAM 104
Query: 483 HKLN 494
KLN
Sbjct: 105 QKLN 108
Score = 38.3 bits (85), Expect = 0.006
Identities = 27/94 (28%), Positives = 47/94 (50%)
Frame = +3
Query: 219 KLESVLIKWQYIFEKYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVK 398
KL + + I Y S S + + L++ +L+ ++ + AF+ G ++ K
Sbjct: 106 KLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTI-VSCK 164
Query: 399 VMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 500
V + G+ GY FV F T++ A +A+ KLNGK
Sbjct: 165 VATDHM-GQSRGYGFVQFDTEDSAKNAIEKLNGK 197
>At4g03110.2 68417.m00421 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 439
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
++ +L++G L N++E+ + + F++ G ++++R G AF+ ++T E+A+
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIK-DLQILRGA-QQTSKGCAFLKYETKEQAVS 161
Query: 477 AM------HKLNGKPIPAHFQWLDLD*TQHPEKLE 563
AM HK+ G +P +W D + +H +L+
Sbjct: 162 AMESINGKHKMEGSTVPLVVKWADTERERHTRRLQ 196
>At4g03110.1 68417.m00420 RNA-binding protein, putative similar to
Etr-1 [Danio rerio] GI:7670536, BRUNO-like 6 RNA-binding
protein [Homo sapiens] GI:15341327, CUG-BP and ETR-3
like factor 3 [Homo sapiens] GI:12746392; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 441
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
++ +L++G L N++E+ + + F++ G ++++R G AF+ ++T E+A+
Sbjct: 104 LEHKLFVGMLPKNVSEAEVQSLFSKYGTIK-DLQILRGA-QQTSKGCAFLKYETKEQAVS 161
Query: 477 AM------HKLNGKPIPAHFQWLDLD*TQHPEKLE 563
AM HK+ G +P +W D + +H +L+
Sbjct: 162 AMESINGKHKMEGSTVPLVVKWADTERERHTRRLQ 196
>At1g71770.1 68414.m08295 polyadenylate-binding protein 5 (PABP5)
identical to GB:Q05196 from [Arabidopsis thaliana]
Length = 668
Score = 43.2 bits (97), Expect = 2e-04
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPL-AVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
L++G L+P++ ES ++ FN++ P+ ++V R+ T GYA+V+F E+A AM
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVA--PVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAME 103
Query: 486 KLNGKPI 506
LN PI
Sbjct: 104 SLNYAPI 110
Score = 35.9 bits (79), Expect = 0.032
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ +L+ ++ + + F+ G + KVM N G G+ FV + EEA+ AM +
Sbjct: 330 LYLKNLDDSVNDEKLKEMFSEYGN-VTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKE 387
Query: 489 LNGKPI 506
+NGK I
Sbjct: 388 MNGKMI 393
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/72 (27%), Positives = 38/72 (52%)
Frame = +3
Query: 282 SPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTD 461
S +++ + +++ +L+ ++ + F+ G L+ KV + G GY FV F+ +
Sbjct: 125 STRLSGKGNVFIKNLDASIDNKALYETFSSFGTI-LSCKVAMD-VVGRSKGYGFVQFEKE 182
Query: 462 EEAIDAMHKLNG 497
E A A+ KLNG
Sbjct: 183 ETAQAAIDKLNG 194
>At4g13860.1 68417.m02147 glycine-rich RNA-binding protein, putative
similar to Glycine-rich RNA-binding protein 2,
mitochondrial precursor (AtGRP2) (Swiss-Prot:Q9SVM8)
[Arabidopsis thaliana] ; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 87
Score = 42.7 bits (96), Expect = 3e-04
Identities = 21/70 (30%), Positives = 40/70 (57%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
M ++++G+L P T+ + AF+ G A+ VMR+++T G+ FV + + EA
Sbjct: 1 MATRVYVGNLSPTTTDDMLREAFSGYGNVVDAI-VMRDRYTDRSRGFGFVTYSSHSEAEA 59
Query: 477 AMHKLNGKPI 506
A+ ++GK +
Sbjct: 60 AVSGMDGKEL 69
>At2g27330.1 68415.m03286 RNA recognition motif (RRM)-containing
protein
Length = 116
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/95 (28%), Positives = 49/95 (51%)
Frame = +3
Query: 246 QYIFEKYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGE 425
Q+++ + L+ S + L++ + + TE + AF++ GQ L V V+ +K
Sbjct: 4 QFLYRSFTPLLFS--RSFSSTLFVKGISFSSTEETLTQAFSQYGQ-VLKVDVIMDKIRCR 60
Query: 426 PAGYAFVHFQTDEEAIDAMHKLNGKPIPAHFQWLD 530
P G+A+V F + EEA A+ +LN + + LD
Sbjct: 61 PKGFAYVTFSSKEEAEKALLELNAQLVDGRVVILD 95
>At3g16380.1 68416.m02074 polyadenylate-binding protein, putative /
PABP, putative similar to polyadenylate-binding protein
(poly(A)-binding protein) from {Arabidopsis thaliana}
SP|P42731, [Cucumis sativus] GI:7528270, {Homo sapiens}
SP|Q13310, {Arabidopsis thaliana} SP|Q05196; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 537
Score = 41.1 bits (92), Expect = 8e-04
Identities = 21/62 (33%), Positives = 38/62 (61%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++G L P++TE ++ F+ L ++V + RN TG+ YA+++F + A +AM +
Sbjct: 23 LYVGDLSPDVTEKDLIDKFS-LNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 489 LN 494
LN
Sbjct: 82 LN 83
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = +2
Query: 554 ETRA--NMQHEREF-SVWVGDLSPDVDDYSLYRVFA 652
ET+A N QH F S++VGDLSPDV + L F+
Sbjct: 7 ETQALGNHQHSSRFGSLYVGDLSPDVTEKDLIDKFS 42
>At5g18810.1 68418.m02235 SC35-like splicing factor, 28 kD (SCL28)
nearly identical to SC35-like splicing factor SCL28, 28
kD [Arabidopsis thaliana] GI:9843655; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 236
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Frame = +3
Query: 360 AFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 506
+F R G PL + + RN +TGEP G+ FV ++ E+A +AM ++N K I
Sbjct: 66 SFERFG--PLKDIYLPRNYYTGEPRGFGFVKYRYAEDAAEAMKRMNHKVI 113
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 40.7 bits (91), Expect = 0.001
Identities = 19/63 (30%), Positives = 40/63 (63%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G + ++TE ++A F++ G+ + V ++R+K TG+ G+AF+ ++ I A+
Sbjct: 38 VYVGGIPFDLTEGDLLAVFSQYGEI-VDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDN 96
Query: 489 LNG 497
LNG
Sbjct: 97 LNG 99
>At3g20930.1 68416.m02645 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 374
Score = 40.7 bits (91), Expect = 0.001
Identities = 22/67 (32%), Positives = 39/67 (58%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++ L +E + AAF G+ + VK++ +K + GYAF+ + T+E A A+
Sbjct: 283 KLFITGLSFYTSEKTLRAAFEGFGEL-VEVKIIMDKISKRSKGYAFLEYTTEEAAGTALK 341
Query: 486 KLNGKPI 506
++NGK I
Sbjct: 342 EMNGKII 348
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM- 482
+L++G + +E + F+R G AV V + K TG+P G+ FV F D + + A+
Sbjct: 7 KLFVGGIAKETSEEALKQYFSRYGAVLEAV-VAKEKVTGKPRGFGFVRFANDCDVVKALR 65
Query: 483 --HKLNGKPI 506
H + GKP+
Sbjct: 66 DTHFILGKPV 75
>At4g34110.1 68417.m04839 polyadenylate-binding protein 2 (PABP2)
non-consensus TA donor splice site at exon 2,
polyadenylate-binding protein - Triticum aestivum
(common wheat),PIR:T06979
Length = 443
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/80 (31%), Positives = 44/80 (55%)
Frame = +3
Query: 267 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 446
++L ++ L++ +L+P++++ + F+ G + KVMR+ G G FV
Sbjct: 120 QNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGT-VTSSKVMRDP-NGTSKGSGFV 177
Query: 447 HFQTDEEAIDAMHKLNGKPI 506
F T EEA +AM +L+GK I
Sbjct: 178 AFATPEEATEAMSQLSGKMI 197
>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp33, putative similar to
SP|P19684 33 kDa ribonucleoprotein, chloroplast
precursor {Nicotiana sylvestris}; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 308
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++ +L + + F P++ +V+ G +GY FV F T EEA +A+
Sbjct: 195 KLYVSNLAWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAIT 254
Query: 486 KLNGKPI 506
KLNGK I
Sbjct: 255 KLNGKEI 261
>At1g73530.1 68414.m08511 RNA recognition motif (RRM)-containing
protein low similarity to SP|Q03251 Glycine-rich
RNA-binding protein 8 (CCR1 protein) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 181
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++ L TE + F + G + + ++ +K P G+AF+ ++T+EEA+ A+
Sbjct: 78 KLYVSGLSFRTTEDTLRDTFEQFGNL-IHMNMVMDKVANRPKGFAFLRYETEEEAMKAIQ 136
Query: 486 KLNGK 500
++GK
Sbjct: 137 GMHGK 141
>At1g74230.1 68414.m08597 glycine-rich RNA-binding protein similar
to RNA-binding protein GB:S46286 from [Nicotiana
sylvestris]
Length = 289
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/79 (27%), Positives = 48/79 (60%)
Frame = +3
Query: 270 SLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVH 449
S+++S + ++++G + + E + AF++ G+ + K++ ++ TG G+AFV
Sbjct: 23 SMLQSIRCMSSSKIFVGGISYSTDEFGLREAFSKYGE-VVDAKIIVDRETGRSRGFAFVT 81
Query: 450 FQTDEEAIDAMHKLNGKPI 506
F + EEA +AM +L+G+ +
Sbjct: 82 FTSTEEASNAM-QLDGQDL 99
>At4g00830.1 68417.m00114 RNA recognition motif (RRM)-containing
protein similar to nucleolin protein; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 495
Score = 39.5 bits (88), Expect = 0.003
Identities = 23/81 (28%), Positives = 45/81 (55%)
Frame = +3
Query: 258 EKYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGY 437
EKY L+ P + +++G L ++ E + +G+ V++M+++ +G+ GY
Sbjct: 103 EKYSHLLSLPPHGSE--VFIGGLPRDVGEEDLRDLCEEIGEI-FEVRLMKDRDSGDSKGY 159
Query: 438 AFVHFQTDEEAIDAMHKLNGK 500
AFV F+T + A A+ +L+ K
Sbjct: 160 AFVAFKTKDVAQKAIEELHSK 180
>At3g04500.1 68416.m00477 RNA recognition motif (RRM)-containing
protein similar to ssRNA-binding protein [Dictyostelium
discoideum] GI:1546894; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 245
Score = 39.5 bits (88), Expect = 0.003
Identities = 22/65 (33%), Positives = 35/65 (53%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L+ G L + + + AF R +A KV+R+K TG+ GY FV F + A+
Sbjct: 138 RLFCGDLGNEVNDDVLSKAFARFPTFNMA-KVIRDKRTGKTKGYGFVSFLNPADLAAALK 196
Query: 486 KLNGK 500
++NGK
Sbjct: 197 EMNGK 201
>At2g18510.1 68415.m02157 pre-mRNA splicing factor, putative similar
to SP|Q15427 Splicing factor 3B subunit 4 (Spliceosome
associated protein 49) (SAP 49) (SF3b50) (Pre-mRNA
splicing factor SF3b 49 kDa subunit) {Homo sapiens};
contains Pfam profile PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain)
Length = 363
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/78 (23%), Positives = 39/78 (50%)
Frame = +3
Query: 267 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 446
K+ + + L++G+L+P++ E + F+ G K+MR+ TG G+ F+
Sbjct: 100 KASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFI 159
Query: 447 HFQTDEEAIDAMHKLNGK 500
+ + E + A+ + G+
Sbjct: 160 SYDSFEASDAAIESMTGQ 177
Score = 27.9 bits (59), Expect = 8.4
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = +2
Query: 533 RLNTASRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
R+N AS++ ++ + ++++G+L PDVD+ LY F++ K++ D
Sbjct: 97 RVNKASQDKKSL---DVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRD 147
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/63 (30%), Positives = 37/63 (58%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
++++G + + TE + +G+ V++MR K +G+ GYAFV F++ + A +A+
Sbjct: 93 EVYLGGIPTDATEGDLKGFCGSIGE-VTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAID 151
Query: 486 KLN 494
LN
Sbjct: 152 TLN 154
>At3g13224.2 68416.m01658 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 358
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHF---QTDEEAID 476
++++G L + T + F + G+ +V +MR++ TG+P G+ F+ F ++ I+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSV-IMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 477 AMHKLNGKPI 506
H +NGK +
Sbjct: 79 DTHVINGKQV 88
>At3g13224.1 68416.m01657 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 231
Score = 38.7 bits (86), Expect = 0.004
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHF---QTDEEAID 476
++++G L + T + F + G+ +V +MR++ TG+P G+ F+ F ++ I+
Sbjct: 20 KIFIGGLHKDTTNTVFNKHFGKYGEITDSV-IMRDRHTGQPRGFGFITFADPSVVDKVIE 78
Query: 477 AMHKLNGKPI 506
H +NGK +
Sbjct: 79 DTHVINGKQV 88
>At5g19030.1 68418.m02261 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 172
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ +++E + F+ GQ VK++ N+ T + GY +V F + E+A A+
Sbjct: 79 LFVKGFSDSVSEGRLKKVFSEFGQ-VTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 137
Query: 489 LNGKPIPAHF 518
+NGK F
Sbjct: 138 MNGKFFDGRF 147
>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 404
Score = 38.3 bits (85), Expect = 0.006
Identities = 22/59 (37%), Positives = 33/59 (55%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
Q +L++G + + E+ + F+ G+ L V VMR K TG P G+ FV F +D ID
Sbjct: 5 QGKLFIGGISWDTDENLLREYFSNFGE-VLQVTVMREKATGRPRGFGFVAF-SDPAVID 61
Score = 35.9 bits (79), Expect = 0.032
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
++++G L P +T A F G AV +M ++ T P G+ FV F +++ +H
Sbjct: 111 KIFVGGLPPALTSDEFRAYFETYGPVSDAV-IMIDQTTQRPRGFGFVSFDSEDSVDLVLH 169
Query: 486 K----LNGKPI 506
K LNGK +
Sbjct: 170 KTFHDLNGKQV 180
>At5g19030.2 68418.m02262 RNA recognition motif (RRM)-containing
protein low similarity to Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) from
{Homo sapiens} SP|Q14011, {Rattus norvegicus}
SP|Q61413,{Xenopus laevis} SP|O93235; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 126
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/64 (29%), Positives = 35/64 (54%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ +++E + F+ GQ VK++ N+ T + GY +V F + E+A A+
Sbjct: 60 LFVKGFSDSVSEGRLKKVFSEFGQ-VTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEA 118
Query: 489 LNGK 500
+NGK
Sbjct: 119 MNGK 122
>At3g46020.1 68416.m04979 RNA-binding protein, putative similar to
Cold-inducible RNA-binding protein (Glycine-rich
RNA-binding protein CIRP) from {Homo sapiens} SP|Q14011,
{Rattus norvegicus} SP|Q61413,{Xenopus laevis};
SP|O93235; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 102
Score = 37.9 bits (84), Expect = 0.008
Identities = 19/79 (24%), Positives = 42/79 (53%)
Frame = +3
Query: 297 MQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
+ QL++ L T+ + F+ GQ A +++R+ T P G+ F+ F ++++A
Sbjct: 5 ISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEA-RLIRDSETQRPKGFGFITFDSEDDARK 63
Query: 477 AMHKLNGKPIPAHFQWLDL 533
A+ L+GK + ++++
Sbjct: 64 ALKSLDGKIVDGRLIFVEV 82
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 37.9 bits (84), Expect = 0.008
Identities = 28/103 (27%), Positives = 52/103 (50%), Gaps = 1/103 (0%)
Frame = +3
Query: 252 IFEKYKSLMKSPKMAMQCQ-LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEP 428
+FE+ + S A C+ LW+G + PN+++ + F++ G K+ +F E
Sbjct: 232 LFEEPCLFLNSHPYAKPCKSLWVGGIGPNVSKDDLEEEFSKFG------KIEDFRFLRE- 284
Query: 429 AGYAFVHFQTDEEAIDAMHKLNGKPIPAHFQWLDLD*TQHPEK 557
AF+ + ++A+ A +NGKP+ F +D +Q P+K
Sbjct: 285 RKTAFIDYYEMDDALQA-KSMNGKPMGGSFLRVDFLRSQAPKK 326
Score = 36.7 bits (81), Expect = 0.018
Identities = 22/63 (34%), Positives = 33/63 (52%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
LW+GSL P TES + F R G + V ++ G+AF++++ EEA+ A
Sbjct: 20 LWVGSLTPETTESDLTELFGRYGDID-RITVYSSR------GFAFIYYRHVEEAVAAKEA 72
Query: 489 LNG 497
L G
Sbjct: 73 LQG 75
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGE-PAGYAFVHFQTDEEAIDAM 482
++++G+L+P +TE + F G V+RN + P GYAF+ F + +A+DA+
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFG-------VLRNVWVARRPPGYAFLEFDDERDALDAI 55
Query: 483 HKLNGK 500
L+ K
Sbjct: 56 SALDRK 61
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 37.9 bits (84), Expect = 0.008
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGE-PAGYAFVHFQTDEEAIDAM 482
++++G+L+P +TE + F G V+RN + P GYAF+ F + +A+DA+
Sbjct: 3 RVYVGNLDPRVTERELEDEFKAFG-------VLRNVWVARRPPGYAFLEFDDERDALDAI 55
Query: 483 HKLNGK 500
L+ K
Sbjct: 56 SALDRK 61
>At5g41690.1 68418.m05067 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GI:7673355 from [Nicotiana tabacum]; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 620
Score = 37.5 bits (83), Expect = 0.010
Identities = 23/83 (27%), Positives = 45/83 (54%)
Frame = +3
Query: 285 PKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDE 464
P +++ L++ +L P S I FN +G+ +++++M N G+ GY FV F + +
Sbjct: 238 PPNSVEEVLFVANLSPQTKISDIFDFFNCVGE-VVSIRLMVNH-EGKHVGYGFVEFASAD 295
Query: 465 EAIDAMHKLNGKPIPAHFQWLDL 533
E A+ NG+ + H ++D+
Sbjct: 296 ETKKALENKNGEYLHDHKIFIDV 318
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDA 479
+ L++G L P + + ++ F+ G+ +A KV++++ TG GY FV + + A A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMA-KVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 480 MHKLNG 497
+ +NG
Sbjct: 538 VQAMNG 543
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/66 (28%), Positives = 37/66 (56%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDA 479
+ L++G L P + + ++ F+ G+ +A KV++++ TG GY FV + + A A
Sbjct: 479 ETNLYIGFLPPMLEDDGLINLFSSFGEIVMA-KVIKDRVTGLSKGYGFVKYADVQMANTA 537
Query: 480 MHKLNG 497
+ +NG
Sbjct: 538 VQAMNG 543
>At2g36660.1 68415.m04496 polyadenylate-binding protein, putative /
PABP, putative
Length = 609
Score = 36.7 bits (81), Expect = 0.018
Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Frame = +3
Query: 246 QYIFEKYKSLMKSPKM-AMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTG 422
Q + E++K + KM A +++ ++ +TE + F++ G + K+M ++ G
Sbjct: 284 QLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFSQCGTIT-STKLMCDE-KG 341
Query: 423 EPAGYAFVHFQTDEEAIDAMHKLNGK 500
+ G+ FV F T EEAIDA+ +G+
Sbjct: 342 KSKGFGFVCFSTPEEAIDAVKTFHGQ 367
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQR-PLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
L+M +L+ +++E + F G+ LA+ N+ GYAFV+F E+A A
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLC---RGYAFVNFDNPEDARRAAE 259
Query: 486 KLNG 497
+NG
Sbjct: 260 TVNG 263
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 36.7 bits (81), Expect = 0.018
Identities = 25/80 (31%), Positives = 43/80 (53%)
Frame = +3
Query: 267 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 446
+SL ++ + L++ +L+ ++T+ + F G + KVMR+ +G G FV
Sbjct: 315 QSLKEAADKSQGSNLYVKNLDESVTDDKLREHFAPFGTIT-SCKVMRDP-SGVSRGSGFV 372
Query: 447 HFQTDEEAIDAMHKLNGKPI 506
F T EEA A+ ++NGK I
Sbjct: 373 AFSTPEEATRAITEMNGKMI 392
Score = 33.9 bits (74), Expect = 0.13
Identities = 20/63 (31%), Positives = 35/63 (55%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++ +L+ ++ + F+ G L+ KV + +G+ GY FV + TDE A A+ K
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPI-LSCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 489 LNG 497
LNG
Sbjct: 193 LNG 195
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 36.3 bits (80), Expect = 0.024
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGE-PAGYAFVHFQTDEEAIDAM 482
++++G+L+P +TE + F G V+R+ + P GYAF+ F+ +A DA+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRAFG-------VVRSVWVARRPPGYAFLDFEDPRDARDAI 55
Query: 483 HKLNGK 500
L+GK
Sbjct: 56 RALDGK 61
>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
similar to GB:CAB75429 (GI:6996560) from [Nicotiana
plumbaginifolia], contains Pfam profiles: PF00076 RNA
recognition motif (3 copies)
Length = 427
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/36 (47%), Positives = 27/36 (75%)
Frame = +2
Query: 587 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
F+++VGDLSP+V D +LY+ F S ++S A+V+ D
Sbjct: 144 FNIFVGDLSPEVTDATLYQSF-SVFSSCSDARVMWD 178
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 36.3 bits (80), Expect = 0.024
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGE-PAGYAFVHFQTDEEAIDAM 482
++++G+L+P +TE + F G V+R+ + P GYAF+ F+ +A DA+
Sbjct: 3 RVYVGNLDPRVTERELEDEFRSFG-------VIRSVWVARRPPGYAFLDFEDSRDARDAI 55
Query: 483 HKLNGK 500
+++GK
Sbjct: 56 REVDGK 61
>At1g60000.1 68414.m06759 29 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein cp29, putative similar to
29 kDa ribonucleoprotein chloroplast precursor
{Nicotiana sylvestris} SP|Q08935, SP|Q08937; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM) contains an AG-donor site at
intron.
Length = 258
Score = 36.3 bits (80), Expect = 0.024
Identities = 29/109 (26%), Positives = 50/109 (45%)
Frame = +3
Query: 270 SLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVH 449
S + P A+ +L+ G+L N+ +S +A + P V+V+ N+ TG+ G+AFV
Sbjct: 74 SAVLDPPAAVNTKLYFGNLPYNV-DSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVT 132
Query: 450 FQTDEEAIDAMHKLNGKPIPAHFQWLDLD*TQHPEKLEPICNMKENSLF 596
E+ + L+G ++ P K EP+ E+ LF
Sbjct: 133 MSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNK-EPLYPETEHKLF 180
>At1g55310.1 68414.m06318 SC35-like splicing factor, 33 kD (SCL33)
nearly identical to SC35-like splicing factor SCL33, 33
kD [Arabidopsis thaliana] GI:9843659
Length = 220
Score = 35.5 bits (78), Expect = 0.042
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +3
Query: 405 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 497
R+ +TG+P G+ FV F +A DA H ++G
Sbjct: 69 RDYYTGDPRGFGFVQFMDPADAADAKHHMDG 99
>At1g34140.1 68414.m04235 polyadenylate-binding protein, putative /
PABP, putative non-consensus splice donor TA at exon 1;
similar to polyadenylate-binding protein
(poly(A)-binding protein) from [Triticum aestivum]
GI:1737492, [Nicotiana tabacum] GI:7673355, {Arabidopsis
thaliana} SP|P42731; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 407
Score = 35.5 bits (78), Expect = 0.042
Identities = 23/80 (28%), Positives = 40/80 (50%)
Frame = +3
Query: 267 KSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFV 446
+ +++ K L++ +L+ ++ + + F+ G + KVM + G G FV
Sbjct: 211 EKIIRDMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTIT-SCKVMVHS-NGISKGVGFV 268
Query: 447 HFQTDEEAIDAMHKLNGKPI 506
F T EEA AM K+NGK +
Sbjct: 269 EFSTSEEASKAMLKMNGKMV 288
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 35.5 bits (78), Expect = 0.042
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +3
Query: 282 SPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTD 461
S +++ + +++ +L+ ++ + F+ G L+ KV + TG GY FV F+ +
Sbjct: 129 STRLSGKGNIFIKNLDASIDNKALFETFSSFGTI-LSCKVAMD-VTGRSKGYGFVQFEKE 186
Query: 462 EEAIDAMHKLNG 497
E A A+ KLNG
Sbjct: 187 ESAQAAIDKLNG 198
Score = 34.3 bits (75), Expect = 0.097
Identities = 20/66 (30%), Positives = 36/66 (54%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ +L+ ++ + + F+ G + KVM N G G+ FV + EEA+ A+ +
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGN-VTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSE 391
Query: 489 LNGKPI 506
+NGK I
Sbjct: 392 MNGKMI 397
>At4g14300.1 68417.m02203 heterogeneous nuclear ribonucleoprotein,
putative / hnRNP, putative
Length = 411
Score = 35.1 bits (77), Expect = 0.055
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
++++G L P +T+ F G P+ V +M ++ T P G+ FV F + E+A+D++
Sbjct: 111 KIFVGGLPPTLTDEEFRQYFEVYG--PVTDVAIMYDQATNRPRGFGFVSFDS-EDAVDSV 167
Query: 483 -----HKLNGKPI 506
H L+GK +
Sbjct: 168 LHKTFHDLSGKQV 180
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
Q +L++G + E + F G+ A+ VMR+K TG P G+ FV F +D +D
Sbjct: 5 QGKLFVGGISWETDEDKLREHFTNYGEVSQAI-VMRDKLTGRPRGFGFVIF-SDPSVLD 61
>At4g10110.1 68417.m01654 RNA recognition motif (RRM)-containing
protein contains INTERPRO:IPR000504 RNA-binding region
RNP-1 (RNA recognition motif) domain
Length = 173
Score = 34.7 bits (76), Expect = 0.073
Identities = 16/65 (24%), Positives = 38/65 (58%)
Frame = +3
Query: 303 CQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
C +++G+++ +++ + + G R + + + R+K T +P G+AF ++T+E A A+
Sbjct: 7 CTVYIGNVDERVSDRVLYDIMIQAG-RVIDLHIPRDKETDKPKGFAFAEYETEEIADYAV 65
Query: 483 HKLNG 497
+G
Sbjct: 66 KLFSG 70
>At3g13570.1 68416.m01707 SC35-like splicing factor, 30a kD (SCL30a)
almost identical to SC35-like splicing factor SCL30a
GI:9843661 from [Arabidopsis thaliana]; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 34.3 bits (75), Expect = 0.097
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +3
Query: 405 RNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 497
R+ +TG+P G+ F+ F +A +A H+++G
Sbjct: 70 RDYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100
>At5g44200.1 68418.m05408 nuclear cap-binding protein, putative
similar to SP|P52298 20 kDa nuclear cap binding protein
(CBP20) (NCBP interacting protein 1) {Homo sapiens};
non-consensus AT donor splice site at exon 4, AC
acceptor splice site at exon 5; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 257
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G++ TE + F+R G+ + + +K T P G+ FV F + E+ DA+
Sbjct: 36 VYIGNVSFYTTEEQLYELFSRAGEIKKIIMGL-DKNTKTPCGFCFVLFYSREDTEDAVKY 94
Query: 489 LNG-----KPIPAHFQW 524
++G +PI F W
Sbjct: 95 ISGTILDDRPIRVDFDW 111
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +3
Query: 393 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 494
++++R+KFT G+AFVHF + E+A A+ N
Sbjct: 487 LRLVRDKFTHVSRGFAFVHFYSVEDATKALEATN 520
>At4g26650.1 68417.m03840 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 455
Score = 33.5 bits (73), Expect = 0.17
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID--- 476
++++G L ++TE+ F++ G V VM + T P G+ F+ F + EE++D
Sbjct: 123 KIFVGGLPSSITEAEFKNYFDQFGTIADVV-VMYDHNTQRPRGFGFITFDS-EESVDMVL 180
Query: 477 --AMHKLNGKPI 506
H+LNGK +
Sbjct: 181 HKTFHELNGKMV 192
>At4g12640.1 68417.m01989 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 823
Score = 33.5 bits (73), Expect = 0.17
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQ-RPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
LW+G+L + E + F R G+ LA + R+ YAFV+F DE+A A+
Sbjct: 25 LWVGNLPHGILERELADRFLRFGELESLAFQPGRS--------YAFVNFNHDEDAFAAIE 76
Query: 486 KLNGKPI 506
L G P+
Sbjct: 77 SLQGFPL 83
>At1g54080.1 68414.m06162 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 426
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/36 (44%), Positives = 25/36 (69%)
Frame = +2
Query: 587 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
F+++VGDLSP+V D +L+ F S + S A+V+ D
Sbjct: 148 FNIFVGDLSPEVTDAALFDSF-SAFNSCSDARVMWD 182
>At5g55550.3 68418.m06922 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID--- 476
++++G L ++TE F++ G V VM + T P G+ F+ F +D +A+D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVV-VMYDHNTQRPRGFGFITFDSD-DAVDRVL 168
Query: 477 --AMHKLNGK 500
H+LNGK
Sbjct: 169 HKTFHELNGK 178
>At5g55550.2 68418.m06921 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 460
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID--- 476
++++G L ++TE F++ G V VM + T P G+ F+ F +D +A+D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVV-VMYDHNTQRPRGFGFITFDSD-DAVDRVL 168
Query: 477 --AMHKLNGK 500
H+LNGK
Sbjct: 169 HKTFHELNGK 178
>At5g55550.1 68418.m06920 RNA recognition motif (RRM)-containing
protein similar to DAZ associated protein 1 [Homo
sapiens] GI:8671754; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 448
Score = 33.1 bits (72), Expect = 0.22
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID--- 476
++++G L ++TE F++ G V VM + T P G+ F+ F +D +A+D
Sbjct: 111 KIFVGGLPSSITEEEFKNYFDQFGTIADVV-VMYDHNTQRPRGFGFITFDSD-DAVDRVL 168
Query: 477 --AMHKLNGK 500
H+LNGK
Sbjct: 169 HKTFHELNGK 178
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++G+L NM+E + F G L V++ + TG+ G+ F+ F E + A
Sbjct: 266 KLYVGNLHFNMSELQLRQIFEAFGPVEL-VQLPLDPETGQCKGFGFIQFVQLEHSKAAQI 324
Query: 486 KLNGK 500
LNGK
Sbjct: 325 ALNGK 329
>At1g17370.1 68414.m02118 oligouridylate-binding protein, putative
similar to oligouridylate binding protein [Nicotiana
plumbaginifolia] GI:6996560; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 419
Score = 33.1 bits (72), Expect = 0.22
Identities = 16/36 (44%), Positives = 24/36 (66%)
Frame = +2
Query: 587 FSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
F+++VGDLSP+V D L+ F S Y + A+V+ D
Sbjct: 139 FNIFVGDLSPEVTDAMLFTCF-SVYPTCSDARVMWD 173
>At5g04600.1 68418.m00460 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 222
Score = 32.7 bits (71), Expect = 0.29
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++G + E+ I A F++ G V+V RNK TG+ + F+ F+ E A A
Sbjct: 62 LYIGRIPHGFYETEIEAFFSQFGTVK-RVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120
Query: 489 LNGKPIPAH 515
+N + H
Sbjct: 121 MNDYLLMEH 129
>At4g24770.1 68417.m03546 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33)
(RNA-binding protein cp31) {Arabidopsis thaliana};
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 329
Score = 32.7 bits (71), Expect = 0.29
Identities = 19/49 (38%), Positives = 30/49 (61%)
Frame = +2
Query: 548 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
SR RA +E F V+VG+L DVD+ L ++F S++ + A+V+ D
Sbjct: 231 SRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF-SEHGKVVEARVVYD 278
>At2g21440.1 68415.m02551 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1003
Score = 32.7 bits (71), Expect = 0.29
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 393 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNG 497
V + +N TG P G+AFV F ++A +A+ K NG
Sbjct: 360 VFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNG 394
Score = 28.3 bits (60), Expect = 6.3
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = +3
Query: 279 KSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQT 458
KSP A + + L ++T + + AF+ +G V NK + E G+AFV F
Sbjct: 14 KSPHAA--ATVCVSGLPYSITNAQLEEAFSEVGPVRRCFLVT-NKGSDEHRGFAFVKFAL 70
Query: 459 DEEAIDAMHKLNGKPI 506
E+ A+ NG +
Sbjct: 71 QEDVNRAIELKNGSTV 86
>At1g71800.1 68414.m08298 cleavage stimulation factor, putative
similar to cleavage stimulation factor 64 kilodalton
subunit GB:AAD47839 GI:5713194 from [Drosophila
melanogaster], SP|P33240 Cleavage stimulation factor, 64
kDa subunit {Homo sapiens}; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 461
Score = 32.7 bits (71), Expect = 0.29
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = +3
Query: 276 MKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQ 455
M S +C +++G++ + TE + +G ++ +++ ++ TG+P GY F ++
Sbjct: 1 MASSSSQRRC-VFVGNIPYDATEEQLREICGEVGP-VVSFRLVTDRETGKPKGYGFCEYK 58
Query: 456 TDEEAIDAMHKLNGKPI 506
+E A+ A L I
Sbjct: 59 DEETALSARRNLQSYEI 75
>At5g64200.2 68418.m08063 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +3
Query: 393 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 506
V + R++ TG+ G+AFV ++ +EA A+ +L+G+ +
Sbjct: 45 VFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVV 82
>At5g64200.1 68418.m08062 arginine/serine-rich splicing factor SC35
contains similarity to splicing factor; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 303
Score = 32.3 bits (70), Expect = 0.39
Identities = 13/38 (34%), Positives = 26/38 (68%)
Frame = +3
Query: 393 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGKPI 506
V + R++ TG+ G+AFV ++ +EA A+ +L+G+ +
Sbjct: 45 VFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVV 82
>At5g59860.1 68418.m07506 RNA recognition motif (RRM)-containing
protein similar to SP|Q14011 Cold-inducible RNA-binding
protein (Glycine-rich RNA-binding protein CIRP) {Homo
sapiens}; contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 157
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/35 (31%), Positives = 25/35 (71%)
Frame = +3
Query: 396 KVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLNGK 500
++++++ T P G+ F+ F+++++A A+ LNGK
Sbjct: 96 RLIKDQQTQRPKGFGFITFESEDDAQKALKALNGK 130
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G+L ++ E + F++ G V + K P GYAFV F +A DA+H
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGP----VVQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 489 LNGKPIPAH 515
+G H
Sbjct: 65 RDGYDFDGH 73
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G+L ++ E + F++ G V + K P GYAFV F +A DA+H
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGP----VVQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 489 LNGKPIPAH 515
+G H
Sbjct: 65 RDGYDFDGH 73
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 32.3 bits (70), Expect = 0.39
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G+L ++ E + F++ G V + K P GYAFV F +A DA+H
Sbjct: 9 VYVGNLPGDIREREVEDLFSKYGP----VVQIDLKVPPRPPGYAFVEFDDARDAEDAIHG 64
Query: 489 LNGKPIPAH 515
+G H
Sbjct: 65 RDGYDFDGH 73
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G+L ++ E + F++ G V + K P GYAFV F+ +A DA++
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGP----VVQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 489 LNGKPIPAHFQWLDL 533
+G H ++L
Sbjct: 65 RDGYDFDGHHLRVEL 79
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 31.9 bits (69), Expect = 0.52
Identities = 20/75 (26%), Positives = 37/75 (49%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G+L ++ E + F++ G V + K P GYAFV F+ +A DA++
Sbjct: 9 IYVGNLPGDIREREVEDLFSKYGP----VVQIDLKIPPRPPGYAFVEFEDARDADDAIYG 64
Query: 489 LNGKPIPAHFQWLDL 533
+G H ++L
Sbjct: 65 RDGYDFDGHHLRVEL 79
>At5g40490.1 68418.m04910 RNA recognition motif (RRM)-containing
protein ribonucleoprotein, Xenopus laevis, PIR:S40778;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 423
Score = 31.1 bits (67), Expect = 0.90
Identities = 15/57 (26%), Positives = 32/57 (56%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAID 476
++++G L T + + F + G+ +V +M+++ TG+P G+ FV + D +D
Sbjct: 43 KIFVGGLARETTSAEFLKHFGKYGEITDSV-IMKDRKTGQPRGFGFVTY-ADSSVVD 97
>At4g19610.1 68417.m02881 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 783
Score = 31.1 bits (67), Expect = 0.90
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = +3
Query: 393 VKVMR--NKFTGEPAGYAFVHFQTDEEAIDAMHKL 491
+K MR K G+ AGYAFV F T +EA++A L
Sbjct: 695 IKSMRLPKKNIGQYAGYAFVEFVTKQEALNAKKAL 729
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 31.1 bits (67), Expect = 0.90
Identities = 12/25 (48%), Positives = 19/25 (76%)
Frame = +3
Query: 429 AGYAFVHFQTDEEAIDAMHKLNGKP 503
+GYAFV+F+ + +A DA+ KL+ P
Sbjct: 35 SGYAFVYFEDERDAEDAIRKLDNFP 59
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 31.1 bits (67), Expect = 0.90
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 312 WMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKL 491
++G L ++ + AF + G + KV+ +KF+G G+ F+ F + +A+ +
Sbjct: 10 FIGGLAWTTSDRGLRDAFEKYGHL-VEAKVVLDKFSGRSRGFGFITFDEKKAMDEAIAAM 68
Query: 492 NG 497
NG
Sbjct: 69 NG 70
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
+++G L ++TE + F+ G L VK++ ++ Y FV F A DA+
Sbjct: 9 VYVGGLPYDITEEAVRRVFSIYGS-VLTVKIVNDRSVRGKC-YGFVTFSNRRSADDAIED 66
Query: 489 LNGKPI 506
++GK I
Sbjct: 67 MDGKSI 72
Score = 30.3 bits (65), Expect = 1.6
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 590 SVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILDNS 700
SV+VG L D+ + ++ RVF S Y S+ T K++ D S
Sbjct: 8 SVYVGGLPYDITEEAVRRVF-SIYGSVLTVKIVNDRS 43
>At4g20030.1 68417.m02932 RNA recognition motif (RRM)-containing
protein low similarity to heterogeneous nuclear
ribonucleoprotein G [Mus musculus] GI:5579009; contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 152
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/93 (20%), Positives = 48/93 (51%)
Frame = +3
Query: 255 FEKYKSLMKSPKMAMQCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAG 434
F K K+ + + +A + + + +L + +E F+ F+ G+ VK+++++ G
Sbjct: 26 FPKIKASLFNYPLASK--IMVRNLPFSTSEDFLKREFSAFGEIA-EVKLIKDEAMKRSKG 82
Query: 435 YAFVHFQTDEEAIDAMHKLNGKPIPAHFQWLDL 533
YAF+ F + ++A A+ ++ + ++D+
Sbjct: 83 YAFIQFTSQDDAFLAIETMDRRMYNGRMIYIDI 115
>At4g19020.1 68417.m02803 chromomethylase 2 (CMT2) nearly identical
to chromomethylase CMT2 [Arabidopsis thaliana]
GI:14583094
Length = 1295
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = -2
Query: 633 E*SSTSGLRSPTQTENSLSCC--ILALVSLDAVFSLNLTTGNVPVWVFHSIC 484
E S+ LR+P +EN L CC ++ S +++ +G +PV +S C
Sbjct: 685 EYSTFQTLRNPKTSENKLECCADVVPTESTESILKKKSFSGELPVLDLYSGC 736
>At5g50250.1 68418.m06223 31 kDa ribonucleoprotein, chloroplast,
putative / RNA-binding protein RNP-T, putative /
RNA-binding protein 1/2/3, putative / RNA-binding
protein cp31, putative similar to SP|Q04836 31 kDa
ribonucleoprotein, chloroplast precursor (RNA-binding
protein RNP-T) (1/2/3) (AtRBP33) (cp31) {Arabidopsis
thaliana}; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 289
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = +2
Query: 548 SRETRANMQHEREFSVWVGDLSPDVDDYSLYRVFASKYTSIKTAKVILD 694
SR R ++ F ++VG+L DVD L R+F S++ + A+V+ D
Sbjct: 194 SRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF-SEHGKVVDARVVSD 241
>At4g24270.2 68417.m03484 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 817
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDA 479
+C ++ +L E I F G +++++ +K TG+P G A+ F DE A
Sbjct: 650 ECTAFISNLSVKAQEEDIRKFFGDDGGVD-SIRILHHKDTGKPRGLAYADFVDDEHLAAA 708
Query: 480 MHK 488
+ K
Sbjct: 709 IAK 711
>At4g24270.1 68417.m03483 RNA recognition motif (RRM)-containing
protein low similarity to tumor-rejection antigen SART3
[Mus musculus] GI:7637845; contains INTERPRO:IPR000504
RNA-binding region RNP-1 (RNA recognition motif) domain
Length = 816
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDA 479
+C ++ +L E I F G +++++ +K TG+P G A+ F DE A
Sbjct: 650 ECTAFISNLSVKAQEEDIRKFFGDDGGVD-SIRILHHKDTGKPRGLAYADFVDDEHLAAA 708
Query: 480 MHK 488
+ K
Sbjct: 709 IAK 711
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/62 (27%), Positives = 31/62 (50%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
L++ L P + + F+R G ++ V+R+ TG+ YAF+ F+ E A K
Sbjct: 245 LFVCKLNPVTEDEDLHTIFSRFGT-VVSADVIRDFKTGDSLCYAFIEFENKESCEQAYFK 303
Query: 489 LN 494
++
Sbjct: 304 MD 305
>At3g55460.1 68416.m06159 SC35-like splicing factor, 30 kD (SCL30)
nearly identical to SC35-like splicing factor SCL30, 30
kD [Arabidopsis thaliana] GI:9843657;
Serine/arginine-rich protein/putative splicing factor,
Arabidopdis thaliana, EMBL:AF099940; contains Pfam
profile PF00076: RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 262
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 393 VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHKLN 494
V + R+ ++G+P G+AFV F +A +A +N
Sbjct: 76 VYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSMN 109
>At3g12640.1 68416.m01573 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 674
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAM 482
+++ ++ T+ + FN+ G+ L ++ + TG+P+G A++ F E A +A+
Sbjct: 518 IFVANVHFGATKDSLSRHFNKFGE-VLKAFIVTDPATGQPSGSAYIEFTRKEAAENAL 574
>At2g47310.1 68415.m05906 flowering time control protein-related /
FCA gamma-related
Length = 512
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +3
Query: 306 QLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
+L++ + TE I F + G + + ++K TGE A Y F+ ++ EE A+
Sbjct: 111 KLYVAPISKTATEYDIRQVFEKYGN-VTEIILPKDKMTGERAAYCFIKYKKVEEGNAAIA 169
Query: 486 KL 491
L
Sbjct: 170 AL 171
>At1g54080.2 68414.m06163 oligouridylate-binding protein, putative
similar to oligouridylate binding protein GI:6996560
from [Nicotiana plumbaginifolia]
Length = 430
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +2
Query: 587 FSVWVGDLSPDVDDYSLYRVFAS 655
F+++VGDLSP+V D +L+ F++
Sbjct: 148 FNIFVGDLSPEVTDAALFDSFSA 170
>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
(U1-70k)
Length = 427
Score = 29.1 bits (62), Expect = 3.6
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Frame = +3
Query: 309 LWMGSLEPNMTESFIMAAFNRLGQRPLA-VKVMRNKFTGEPAGYAFVHFQTDEEAIDAMH 485
L++ L +ES I F G P+ V ++ ++ T +P GYAF+ + + A
Sbjct: 140 LFVSRLNYESSESKIKREFESYG--PIKRVHLVTDQLTNKPKGYAFIEYMHTRDMKAAYK 197
Query: 486 KLNGKPIPAHFQWLDLD 536
+ +G+ I +D++
Sbjct: 198 QADGQKIDGRRVLVDVE 214
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDA 479
Q +L++ L + T + + F+ G A+ ++ +K TG+ GY FV F + A+ A
Sbjct: 74 QRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVIL-DKVTGKSKGYGFVTFMHVDGALLA 132
Query: 480 MHKLNGK 500
+ + + K
Sbjct: 133 LKEPSKK 139
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +3
Query: 300 QCQLWMGSLEPNMTESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDA 479
Q +L++ L + T + + F+ G A+ ++ +K TG+ GY FV F + A+ A
Sbjct: 74 QRKLFIRGLAADTTTEGLRSLFSSYGDLEEAIVIL-DKVTGKSKGYGFVTFMHVDGALLA 132
Query: 480 MHKLNGK 500
+ + + K
Sbjct: 133 LKEPSKK 139
>At1g11350.1 68414.m01303 S-locus lectin protein kinase family
protein contains Serine/Threonine protein kinases
active-site signature, PROSITE:PS00108
Length = 830
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/70 (21%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Frame = +2
Query: 488 IEWKTHTGTFPVVRFRLNTASRETRANMQHE--REFSVWVGD-LSPDVDDYSLYRVFASK 658
++WKT + L R++R + H + ++ + + L+P + D+ L R+F
Sbjct: 606 LDWKTRFNIIDGICRGLMYLHRDSRLKIIHRDLKASNILLDENLNPKISDFGLARIFQGN 665
Query: 659 YTSIKTAKVI 688
+ T +V+
Sbjct: 666 EDEVSTVRVV 675
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 411 KFTGEPAGYAFVHFQTDEEAIDAMHKLNG 497
K P GYAFV F+ +A DA++ +G
Sbjct: 39 KIPPRPPGYAFVEFEDPRDADDAIYGRDG 67
>At2g19380.1 68415.m02260 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM); contains Pfam profile PF00096:
Zinc finger, C2H2 type
Length = 613
Score = 27.9 bits (59), Expect = 8.4
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 339 TESFIMAAFNRLGQRPLAVKVMRNKFTGEPAGYAFVHFQTDEEAIDAMHK 488
T+ + AF G+ VM +K TG GY FV F+T + A +A+ +
Sbjct: 420 TQENLKTAFESYGEIEECSVVM-DKDTGRGKGYGFVMFKTRKGAREALKR 468
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,029,351
Number of Sequences: 28952
Number of extensions: 388192
Number of successful extensions: 1047
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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