Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV10562
(728 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0013 + 24975298-24975352,24975533-24976494,24976621-249771... 33 0.31
09_04_0573 + 18636083-18636237,18637842-18638365,18638420-186385... 32 0.54
06_02_0035 + 10816723-10819497,10819964-10820011 31 0.94
02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978 31 1.2
12_02_1222 + 27145264-27148287 29 2.9
10_08_0509 + 18419815-18422150,18422249-18422291,18423154-184234... 29 2.9
01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,283... 29 2.9
01_06_1609 + 38621264-38621386,38621521-38621578,38621778-386220... 29 3.8
01_06_0789 - 32010131-32010330,32010438-32010866,32011658-320117... 28 6.6
>02_05_0013 +
24975298-24975352,24975533-24976494,24976621-24977136,
24977250-24977442,24978108-24978439
Length = 685
Score = 32.7 bits (71), Expect = 0.31
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Frame = +2
Query: 56 AKSQGRGPVSAHSVHEGVAFGHGRKLCTESVDRCSHCGGPHLREKCADYTAG---IEPQC 226
++++GR P S ++V G G RKL ES H CAD+ + PQ
Sbjct: 298 SRAKGRCPSSTYNVSLGSCSGSQRKLPFESASSPCETALLHKEAPCADHQISLNTVSPQE 357
Query: 227 CNCLHSKLRIRITTLSVSSVQSAKSGTTWQDQTRHTYDPS 346
C + +I + T+S SA +T Q + D S
Sbjct: 358 APCANH--QISLDTVSPQEAPSASPPSTNVIQMEQSEDIS 395
>09_04_0573 +
18636083-18636237,18637842-18638365,18638420-18638529,
18638639-18638677,18638724-18638764,18638862-18638960,
18639405-18639576
Length = 379
Score = 31.9 bits (69), Expect = 0.54
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Frame = +2
Query: 53 PAKSQGRGPV-----SAHSVHEGVAFGHGRKLCTE-SVDRCSHC 166
PAK+ GPV S + ++ HG+K+CT+ SV C C
Sbjct: 188 PAKANAEGPVDNNTDSPQTTESSTSYAHGKKVCTDYSVTACIVC 231
>06_02_0035 + 10816723-10819497,10819964-10820011
Length = 940
Score = 31.1 bits (67), Expect = 0.94
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 126 RPCPKATPSCTE*AETGPLP*LFAGPDRGRQPPSSS 19
RPCP C + GP P + GP +G QP S
Sbjct: 379 RPCPACRSDCASPTDLGPDP-VMPGPCQGEQPTEPS 413
>02_05_0121 + 26015578-26015613,26015734-26016066,26016184-26016978
Length = 387
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/37 (40%), Positives = 16/37 (43%)
Frame = +2
Query: 59 KSQGRGPVSAHSVHEGVAFGHGRKLCTESVDRCSHCG 169
K +GR P H A G G L RCSHCG
Sbjct: 274 KKRGRKPKHQQPPHLAAAAGGGAALPATGDRRCSHCG 310
>12_02_1222 + 27145264-27148287
Length = 1007
Score = 29.5 bits (63), Expect = 2.9
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 132 YAPRVWTGAVTVEAH-TYARNAPIIPRESNLSAAIVYTPSCGYGSQRFQCRVSNPQKVGL 308
Y ++ +GAV H T R A R + SAA++ +PS + +CR + +VG
Sbjct: 696 YRVKLGSGAVVAVKHITRTRAAAAAARSTAASAAMLRSPSAARRTASVRCREFD-SEVGT 754
Query: 309 PGKIKH 326
I+H
Sbjct: 755 LSSIRH 760
>10_08_0509 + 18419815-18422150,18422249-18422291,18423154-18423487,
18423766-18423878,18424461-18424589,18424771-18424864,
18424967-18425050,18425859-18426047,18426897-18427017,
18427476-18427692
Length = 1219
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +3
Query: 108 SLSDMAANYAPRVWTGAVTVEAHTYARNAPIIPRESNL 221
+LSD A +VW G A +ARN P +S L
Sbjct: 1105 ALSDRLCGSATKVWRGGAEWTAEAFARNGAAGPSQSRL 1142
>01_01_0359 + 2829325-2832076,2832223-2832593,2833335-2833695,
2833799-2833868,2834021-2834108,2834325-2834580,
2834758-2834883,2835217-2835425
Length = 1410
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/23 (60%), Positives = 16/23 (69%)
Frame = +1
Query: 220 SVLQLSTLQVADTDHNAFSVECP 288
SV +L L+V D DHNAFS E P
Sbjct: 1115 SVSRLRRLRVLDMDHNAFSGEFP 1137
>01_06_1609 +
38621264-38621386,38621521-38621578,38621778-38622013,
38622536-38622652,38622690-38622798,38622973-38623064,
38623191-38623265,38623333-38623421,38623576-38623625,
38623830-38623870,38623963-38624172,38624278-38624345,
38624434-38624494,38624607-38624840
Length = 520
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +2
Query: 59 KSQGRGPVSAHSVHEGVAFGH-GRKLCTESVDRCSHC 166
+S+ RGP AH V GV GH GR+L + HC
Sbjct: 101 QSKQRGPSEAHFVAAGV-LGHLGRRLLADGGTGADHC 136
>01_06_0789 -
32010131-32010330,32010438-32010866,32011658-32011752,
32011836-32011933,32012586-32012942,32013615-32013792,
32013856-32013936,32014441-32014548,32014916-32015178
Length = 602
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 221 QCCNCLHSK-LRIRITTLSVSSVQSAK 298
+CCNC HSK L+ + S+S+V S +
Sbjct: 112 KCCNCKHSKCLKFLMRFCSISTVDSKR 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,749,679
Number of Sequences: 37544
Number of extensions: 380179
Number of successful extensions: 978
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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