Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10562
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.7  
SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_1837| Best HMM Match : Big_4 (HMM E-Value=8.1)                      30   2.2  
SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)     28   8.9  
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       28   8.9  
SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  
SB_9119| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.9  

>SB_6256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 418

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = -3

Query: 504 ISLAVFYLVICIRVQCLFACVDXXXXXXXXXXYRCVYVCVRVFMFHVCAFH 352
           + +  + + +C+R   ++ CV           Y  VYVCVR ++ +VC  H
Sbjct: 186 VCVGQYVVYVCVRQYVVYVCVRQYVVYVRVGQY-VVYVCVRQYVVYVCVRH 235


>SB_6888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1257

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 116 GHGRKLCTESVDRCSHCGGPH-LREKCAD-YTAGIEPQCCNCLHSKLRIRITTLSV 277
           GH +K C  S    + CG P+ L+EKC +     I   C N   S  ++    ++V
Sbjct: 42  GHCKKTCNTSCTTSNDCGSPNSLQEKCCNGKCVSINTICPNTTTSSTQLSPAIIAV 97


>SB_1837| Best HMM Match : Big_4 (HMM E-Value=8.1)
          Length = 213

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 175 TPTREMRRLYRGNRTSVLQLSTLQVADTDHNAFSVECPIR 294
           T T E+R +  GN    L L  L+V  + HN  S + P+R
Sbjct: 12  TNTIEIRLVVNGNLVHTLVLPNLRVITSKHNTSSDQSPVR 51


>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -3

Query: 477  ICIRV-QCLFACVDXXXXXXXXXXYRCVYVCVRVFMFHVCA 358
            +C RV  CLFACV             CV++ VRV   HVC+
Sbjct: 1297 VCPRVFTCLFACVYPSVSRVLTCLSACVHLSVRV-CSHVCS 1336


>SB_23051| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2141

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 149 DRCSHCGGPHLREKCADYTAGIEPQCCNCLHSKLRIRITTLSVSSVQSAKSG 304
           DRC +CG  H R K     A +    C  + + L  +  T  VS V+ A  G
Sbjct: 835 DRCGYCGRDHPRGKINCPAANVRCDKCTKVGTSLLSKPNT-RVSQVEDAHEG 885


>SB_54032| Best HMM Match : Peptidase_A17 (HMM E-Value=5.20022e-42)
          Length = 832

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 19/67 (28%), Positives = 28/67 (41%)
 Frame = +2

Query: 92  SVHEGVAFGHGRKLCTESVDRCSHCGGPHLREKCADYTAGIEPQCCNCLHSKLRIRITTL 271
           S   GV + H +      V +C +C G H    CA      +P+    +  KLR+    L
Sbjct: 51  SFFTGVKWPHPQGKGKPKVIQCVYCKGKHSTHNCATV---FDPKARKDIVVKLRLCYNCL 107

Query: 272 SVSSVQS 292
           S S + S
Sbjct: 108 SSSHISS 114


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/38 (42%), Positives = 18/38 (47%)
 Frame = +3

Query: 180 YARNAPIIPRESNLSAAIVYTPSCGYGSQRFQCRVSNP 293
           Y R  PI  + SN S   V T SCG G Q      +NP
Sbjct: 729 YLRPCPIDGQYSNWSKFTVCTKSCGTGVQTRTRECNNP 766


>SB_44248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 842

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 535 YTRVYIYY*QRNNGNHRYTESKCHYSKVQIKT-FL*SINTGRNHRNKLK 678
           +TR    Y  R + N   +ESKC ++K Q K   +   N  RNH+ +L+
Sbjct: 719 HTRCSTSYCLRKHNND--SESKCRFNKTQYKAKIITKRNDSRNHQLQLQ 765


>SB_9119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 152

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 535 YTRVYIYY*QRNNGNHRYTESKCHYSKVQIKT-FL*SINTGRNHRNKLK 678
           +TR    Y  R + N   +ESKC ++K Q K   +   N  RNH+ +L+
Sbjct: 80  HTRCSTSYCLRKHNND--SESKCRFNKTQYKAKIITKRNDSRNHQLQLQ 126


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,423,809
Number of Sequences: 59808
Number of extensions: 470478
Number of successful extensions: 1227
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1223
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)