Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10562
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.     29   2.6  
Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.        29   3.4  
Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical pr...    29   4.5  

>Z81552-7|CAB04487.2|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 236 DNCSTEVRFPRYN 198
           D C+TE+RFPRYN
Sbjct: 226 DGCNTEMRFPRYN 238


>AL117201-5|CAB57916.1|  606|Caenorhabditis elegans Hypothetical
           protein F56G4.5 protein.
          Length = 606

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 236 DNCSTEVRFPRYN 198
           D C+TE+RFPRYN
Sbjct: 226 DGCNTEMRFPRYN 238


>AL023811-1|CAA19422.2|  947|Caenorhabditis elegans Hypothetical
           protein C51F7.1 protein.
          Length = 947

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -3

Query: 123 PCPKATPSCTE*AETGPLP*LFAGPDRGRQPPSS 22
           P P++ PS T  A TGPLP   AG  +   PP+S
Sbjct: 733 PPPQSQPSLT--ASTGPLPAEIAGDRQASFPPAS 764


>AF250925-1|AAF74721.1|  542|Caenorhabditis elegans PNGase protein.
          Length = 542

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/13 (76%), Positives = 12/13 (92%)
 Frame = -1

Query: 236 DNCSTEVRFPRYN 198
           D C+TE+RFPRYN
Sbjct: 162 DGCNTEMRFPRYN 174


>Z35599-3|CAA84660.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 120 MAANYAPRV-WTGAVTVEAHTYARNAPIIPRESNLS 224
           + AN  P V W G   +E    A NA I+PR S LS
Sbjct: 313 LQANDLPAVRWVGGPEIELLAIATNARIVPRFSELS 348


>Z32840-7|CAA83681.1|  542|Caenorhabditis elegans Hypothetical
           protein C07G2.3a protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 120 MAANYAPRV-WTGAVTVEAHTYARNAPIIPRESNLS 224
           + AN  P V W G   +E    A NA I+PR S LS
Sbjct: 313 LQANDLPAVRWVGGPEIELLAIATNARIVPRFSELS 348


>Z32840-6|CAD01079.1|  336|Caenorhabditis elegans Hypothetical
           protein C07G2.3b protein.
          Length = 336

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 120 MAANYAPRV-WTGAVTVEAHTYARNAPIIPRESNLS 224
           + AN  P V W G   +E    A NA I+PR S LS
Sbjct: 107 LQANDLPAVRWVGGPEIELLAIATNARIVPRFSELS 142


>U25698-1|AAA92843.1|  542|Caenorhabditis elegans CCT-5 protein.
          Length = 542

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 120 MAANYAPRV-WTGAVTVEAHTYARNAPIIPRESNLS 224
           + AN  P V W G   +E    A NA I+PR S LS
Sbjct: 313 LQANDLPAVRWVGGPEIELLAIATNARIVPRFSELS 348


>Z30662-1|CAA83137.1|  344|Caenorhabditis elegans Hypothetical
           protein T16H12.1 protein.
          Length = 344

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 143 SVDRCSHCGGPHLREKCADYTAG 211
           S + C  CG  H  ++C +YT G
Sbjct: 262 SSETCKFCGNRHSTDECTEYTTG 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,478,281
Number of Sequences: 27780
Number of extensions: 349464
Number of successful extensions: 852
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 816
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)