Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV10562
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01750.2 68418.m00094 expressed protein contains Pfam profile...    31   1.0  
At5g01750.1 68418.m00093 expressed protein contains Pfam profile...    31   1.0  

>At5g01750.2 68418.m00094 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 217

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 163 LWRPTPTREMRRLYRGNRTSVLQLSTLQVADTDHNAFSVECPIRKKWDYLARSNTAY 333
           ++R   T +   LY   R+S+LQL T       HN     C  R K  +L RS   Y
Sbjct: 104 VFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVY 160


>At5g01750.1 68418.m00093 expressed protein contains Pfam profile
           PF04525: Protein of unknown function (DUF567)
          Length = 174

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 163 LWRPTPTREMRRLYRGNRTSVLQLSTLQVADTDHNAFSVECPIRKKWDYLARSNTAY 333
           ++R   T +   LY   R+S+LQL T       HN     C  R K  +L RS   Y
Sbjct: 104 VFRGGSTDQRDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVY 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,471
Number of Sequences: 28952
Number of extensions: 306942
Number of successful extensions: 752
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 752
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)